XLOC_027462 (si:dkey-47k16.4)


Basic Information

Item Value
gene id XLOC_027462
gene name si:dkey-47k16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31085014 ~ 31095639 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053955
CATTGGCCGGTGTGCAACAGGTGTTTGTTGCCTCACgctgaaaaataaatatgaacagcATACTCTAGCAGCTAAACGAATGAGAACAATTTAGCTCCCCCTTTATGGCAAAGCGGAACGAGgataaagtgtccaaagacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaaggagaggagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatttTAAAAGGAGAGACAATaattgtttcacctgcactcagtgtggaaagagttttggaagaaaagacattcttaagattcacatgaggatccacactggagagaaaccgttcacatgcactcagtgtgggaagagtttcagctgctcatcacaccttaatcaacacataagtatccacactggagagaaaccatttacttgcactcagtgtgggaataGTTTCAGCCAATTAGCACACTTTAAtcatcacatgaggatccacactggagagaaaccattcacatgcacttactgtgggaagagtttcagccaatcatcaaactttaataaacacatgaggatccacactggagagaaac

Function

symbol description
si:dkey-47k16.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000113005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053955 True 710 mRNA 0.41 3 31085014 31095639

Neighbor

gene id symbol gene type direction distance location
XLOC_027461 AL953856.5 coding upstream 178273 30906578 ~ 30906741 (+)
XLOC_027460 AL953856.1 coding upstream 179579 30905272 ~ 30905435 (+)
XLOC_027459 AL953856.4 coding upstream 180885 30903981 ~ 30904129 (+)
XLOC_027458 si:dkey-178j11.5 coding upstream 275777 30785713 ~ 30809237 (+)
XLOC_027457 zgc:172014 coding upstream 304338 30775376 ~ 30780676 (+)
XLOC_027463 BX571711.20 coding downstream 135931 31231570 ~ 31231725 (+)
XLOC_027464 BX571711.1 coding downstream 137477 31233116 ~ 31233279 (+)
XLOC_027465 BX571711.3 coding downstream 143666 31239305 ~ 31239453 (+)
XLOC_027466 NA coding downstream 148995 31244634 ~ 31245599 (+)
XLOC_027467 NA coding downstream 150102 31245741 ~ 31246667 (+)
XLOC_027455 CU302413.1 non-coding upstream 438223 30645966 ~ 30646791 (+)
XLOC_027454 NA non-coding upstream 538008 30546035 ~ 30547006 (+)

Expression


Co-expression Network