G877657


Basic Information

Item Value
gene id G877657
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 31018655 ~ 31020070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU998891
TTGACAAACAAGAAGCCTTTATTTTATGTGGAAAAGAACTGCTGTTTCATTCATCATCATGATCCAGATCCTGCACAATCAACTATTTGAGTGCACGCTTAAATCTAGTCATTTGTTTTGAGAGTATAGGGTAGAGGGAGAGTTAATGATTctttgtatacacacacacaagcctttgATAAAAACACAATTACCAGTTTCTTCAATTAGATCAGACAAATATAGgttctgagtcccaaatggcaccctatttcctgcatagtgcagtataatttttatgggccctggtcaaaagtagtgcactatatagggaatagggtaccattttggcCACACAAAGAAAACCTGGCAGGACATCAAGGCTATTAGGTTTTATATCCTCTTCTGTACAATCAAGAACAGTGACCTAGAACACCACGATACCAGCATATACCAACCGCAGCacaaggggaggggaggggggaaagtAACACACATGTCTGACTGAACTGAagaacagagcttctttaattctCGTAATCAATCCCTCCAAATAGAATAGCCCCACAAGAGCACTTTACAGCATGAGGAAAGTAAAGTGTCTTACACGCAGCTGAGTGAGACGCAAAGACACCATCGATTTCATCTCTCTACGCACGGTCTGACTCAATGACTAACTGGAGAGCCTGCATAGGCTTGGGAAGGATGAAACTCACTTTTGGAAATCATGTCTGAATGCATCTTAAAATAATCTCTAGAGCTACACAACCCCTTTAACCCTGTGTAGGTCATTACTGGTATTTGTACATAGTGTTACTAGTTTGTGGGTCATGGAAGCGGCAGTCATGTTCAAATATAGAAGAACATTGTAGCTTTTTTCCCTTTCTGAATATACAATAATTAAATGCATTGTACAGACTGATAGAACAAGCTGCTCACACATATCAAAATGAAGAGATTCTACATTAGTTTCTTCACTACAGAGTGCAAATCAGATGCTTCAAAACATACCTTTTTTAATTAAGAAGAGGACTCACTCTTCCCACAAGCCCCCTCATTGTACATAAACCATtccccattaaaaaaaaatggcaTCTAGTAAATATAATGGAATgtgaaaaattataataattgtgATCCAATCTTTTTCTTTGACAACAGAAATGTCCTTCatgTTGTGAGAAGATGGTAAAAGCCTAGTGAAGGACTGAGCTGAGAGAGATGGATGGGCTCCAGGGCTTGCCAGGAGACCTTTACATGCCGTAGCCAAAGCCTGGTTGGGCCTGAGGTGCCTGGGGGTAGCCTGCAGGAGCCTGGTAACCGTAGCCATAGGCCTGCTGGGGGGGCACGGGCACGCTTGGGCCAGCAGTCAGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU998891 True 1355 lncRNA 0.42 2 31018655 31020070

Neighbor

gene id symbol gene type direction distance location
LOC110533642 LOC106603612 coding downstream 60460 30954608 ~ 30958195 (-)
LOC110533638 aspa coding downstream 276871 30737046 ~ 30741784 (-)
aspa aspa coding downstream 281905 30724154 ~ 30736750 (-)
LOC110533635 LOC106603511 coding downstream 306020 30463799 ~ 30712635 (-)
LOC110533632 LOC106603510 coding downstream 591726 30290755 ~ 30426929 (-)
LOC110534882 NA coding upstream 1392 31021462 ~ 31022225 (-)
LOC110533647 LOC106603522 coding upstream 134401 31154471 ~ 31160510 (-)
LOC110533652 LOC106603525 coding upstream 1226921 32246991 ~ 32353202 (-)
LOC110533653 LOC106603526 coding upstream 1333847 32353917 ~ 32356646 (-)
LOC110533654 LOC106603527 coding upstream 1348616 32368686 ~ 32422880 (-)
G877658 NA non-coding downstream 7806 31010072 ~ 31010849 (-)
G877660 LOC100711908 non-coding downstream 9108 31008894 ~ 31009547 (-)
G877634 NA non-coding downstream 88103 30929992 ~ 30930552 (-)
G877434 NA non-coding downstream 435819 30582612 ~ 30582836 (-)
G877358 NA non-coding downstream 558544 30459703 ~ 30460111 (-)
G877716 NA non-coding upstream 35001 31055071 ~ 31055633 (-)
G877761 NA non-coding upstream 113738 31133808 ~ 31134073 (-)
G877762 NA non-coding upstream 119297 31139367 ~ 31139704 (-)
G877767 NA non-coding upstream 122534 31142604 ~ 31147412 (-)
G877798 NA non-coding upstream 175785 31195855 ~ 31197786 (-)
LOC110533621 NA other downstream 1102150 29906094 ~ 29922728 (-)
G875194 NA other downstream 2033585 28941240 ~ 28985070 (-)
G874706 NA other downstream 2475388 28540229 ~ 28543267 (-)
G873784 LOC106573797 other downstream 3434393 27582929 ~ 27584262 (-)
LOC110533580 tex14 other downstream 3665409 27330589 ~ 27366556 (-)
G878962 NA other upstream 427412 31447482 ~ 31449163 (-)
G879440 LOC106603524 other upstream 1205362 32225432 ~ 32225936 (-)
G879617 NA other upstream 1565821 32585891 ~ 32588838 (-)
G879763 NA other upstream 1770297 32790367 ~ 32790802 (-)

Expression


Co-expression Network