G877767


Basic Information

Item Value
gene id G877767
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 31142604 ~ 31147412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU999008
CTCCTGTCAGCATGTCGTACATGAGAGCTCCCAGGCTCCACCAGTCTACAGCCCGGTTGTGTCCACTCCTCATCAGGATCTCTGGGGCCATGTATTCTATGGTGCCACAGAAGGTGTGAGTAACAGTGCCGTCATGGATTGATTCTTTACACAGGCCAAAGTCTGTGAGCTTGACGTGACCGTTGTTGCTGAGCATGATGTTCTCTGGCTTCAGGTCTCTGTAGATGATGCCTTTCAGATGCAGGTGTCCCAAAGCCATGGAAATCTCTGCCAGATAGAAGcacgctgtgtcCTCCATAAAGATCCCCTCCCTTTCCAATTGCATAAACAGCTCCCCACCTACAAATA

Function

NR:

description
ribosomal protein S6 kinase beta-1-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU999008 True 348 lncRNA 0.51 3 31142604 31147412

Neighbor

gene id symbol gene type direction distance location
LOC110534882 NA coding downstream 120379 31021462 ~ 31022225 (-)
LOC110533642 LOC106603612 coding downstream 184409 30954608 ~ 30958195 (-)
LOC110533638 aspa coding downstream 400820 30737046 ~ 30741784 (-)
aspa aspa coding downstream 405854 30724154 ~ 30736750 (-)
LOC110533635 LOC106603511 coding downstream 429969 30463799 ~ 30712635 (-)
LOC110533647 LOC106603522 coding upstream 7059 31154471 ~ 31160510 (-)
LOC110533652 LOC106603525 coding upstream 1099579 32246991 ~ 32353202 (-)
LOC110533653 LOC106603526 coding upstream 1206505 32353917 ~ 32356646 (-)
LOC110533654 LOC106603527 coding upstream 1221274 32368686 ~ 32422880 (-)
LOC110533655 LOC106603528 coding upstream 1285474 32432886 ~ 32447490 (-)
G877762 NA non-coding downstream 2900 31139367 ~ 31139704 (-)
G877761 NA non-coding downstream 8531 31133808 ~ 31134073 (-)
G877716 NA non-coding downstream 86971 31055071 ~ 31055633 (-)
G877657 NA non-coding downstream 122534 31018655 ~ 31020070 (-)
G877658 NA non-coding downstream 131755 31010072 ~ 31010849 (-)
G877798 NA non-coding upstream 48443 31195855 ~ 31197786 (-)
G877808 NA non-coding upstream 56597 31204009 ~ 31204240 (-)
G877826 NA non-coding upstream 70875 31218287 ~ 31218494 (-)
G878841 NA non-coding upstream 109952 31257364 ~ 31271489 (-)
G878908 NA non-coding upstream 194960 31342372 ~ 31343216 (-)
LOC110533621 NA other downstream 1226099 29906094 ~ 29922728 (-)
G875194 NA other downstream 2157534 28941240 ~ 28985070 (-)
G874706 NA other downstream 2599337 28540229 ~ 28543267 (-)
G873784 LOC106573797 other downstream 3558342 27582929 ~ 27584262 (-)
LOC110533580 tex14 other downstream 3789358 27330589 ~ 27366556 (-)
G878962 NA other upstream 300070 31447482 ~ 31449163 (-)
G879440 LOC106603524 other upstream 1078020 32225432 ~ 32225936 (-)
G879617 NA other upstream 1438479 32585891 ~ 32588838 (-)
G879763 NA other upstream 1642955 32790367 ~ 32790802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding CM030133.1 CM030133.1 3034347 ~ 3044090 (-)