AMCG00010872 (si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069)


Basic Information

Item Value
gene id AMCG00010872
gene name si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3034347 ~ 3044090 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010872
TACGGCACGGCACTGTACGGCACAGCACGGCACCGCGGGAAGGAGCTGCGTGGAGGCTCTTCTGATCAGACAGCAGTTTTGCACCAGGACGGGTGTGCGGATTTCATTGATACCGTGATCGTGTCGAGACCACTGTGCTTTGGATATATAAGCCCGCTGTGTGATGGCTGTTACCGAAGCCGGCTGCGACCTGACCTACTCCAAAATGAGAGGACTGGTGGCTTTCCTGACGGCCTTCATCAAGGAGAGGAAGATGGGCTTGAACGACTTCATTCAGAAACTGGTGTCCAACCCGCACATCTGTCAGCACTCGGATGTCAGGGTGTTCCTGAAGATGGACGAGAATCAGAACGAGCCATCGGACGAGGATGGCGACTCCAACCCACTGTGCCTGACTTCTCCGAGGAGTTCGCTTGCAGAAGAGATGCAGGTCAAGCCATCTGACTTTGACTACCTGAAGATCATCGGAAAGGGCAGCTTTGGGAAGGTTCTGTTGGCGAGACACAAAGACAGCGCAAAGTACTATGCGGTGAAAGTGCTGCAGAAGAAAATCATCCTCAAGAAGAAGGAGCAAAAGCACATCATGGCTGAACGCAGTGTCCTGCTGAAAAATATCAAACACCCCTTCCTGGTGGGGCTGCACTACTCCTTCCAGACCACCGACAAGCTGTACTTTGTGCTGGACTACGTCAACGGGGGCGAGCTGTTCTACCACCTGCAGCGCGAGAGAGTGTTCCTGGAGCCGCGCGCCCGCTTCTACGCCGCCGAGATCGCCAGCGCCCTGGGGTACCTGCACTCCCTGCACATCGTCTACAGAGACCTGAAGCCAGAGAACATCCTGCTGGACTCAGACGGTCACATTGTGCTGACGGACTTCGGCCTTTGCAAGGAGGGGCTCGACCCCAAGGGCACCACGTCCACCTTCTGTGGGACACCTGAGTATTTGGCTCCTGAAGTCCTGCAGAAACAGGCCTACGACCGGACCGTGGACTGGTGGTGCCTGGGCTCGGTGCTGTACGAGATGCTTTATGGCCTGCCTCCGTTCTACAGTCGCAACACGGCCGAGATGTACAATAACATCCTGCACAAGGGCCTGGTGCTGAAGCCCAACATGGAACTCAAGTCCCACGCCTTCTTCTCCCCCATCAGTTGGGATGACCTCATGGCCAAGAAGATCACCCCTCCCTTCGTCCCCGCGGTGACCGGCCCCACTGACCTCTGCCACTTCGACCCTGAGTTCACCCACCTGCCCGTGCCCGGGTCCCTGGGCAACTCGGACAGCATCCTGGTGACCAGCAGTCTGCGGGAGGCCGCCGGGGCGTTCCCGGGCTTCTCCTACGCCCCGCCTGCCGACGACGCCTTCCTGTAAGGGGCCGAGACGCTCTCCCTCACCCTCCGCGGGAACACAGGTGCAGCGAGGCACACCAACGCGTCTCCGACGACGCGGTGGGGCGTTGAGGTGACCGATGACCAGAGTGGAGTCGCCCGCTGCCGTTAGTGGAAGACATGGAACTGGACTTGACCCATCACGGGTTGGGTGGCCGGGGGTCAGTGGCACCAAAAAGGTGCCAGTCTTTGCGGTGGGCTTCCCTCGGGATTTCCAATCATGGCCGTTTTTTCGTTTTTCATGGCCCACCTGCGCCCCCTGCCCACAGTCCCTCCCCTGGCCAGCTGCTGCAGTTCAGAACTCCCCCGAGATGCACATCGAGACATCGGCTACACGGAGTGCCGTGTCTGACGcggtgtctgcgtgtgtgtgagggagagggcAGAGGGGCTGGTAAAGCTCGCTGCTCGAGACACCGAATTGACTTCTGCTGAACGCATATCTGCAACGGCAGCTTCAGATCAGATGCCTTTTCTGCCCCTCCGAGTTCGTGCTTCTATTCAGCATGAATGGTAAATTTTATAATTACGATAATAAAtggtatgttatttttttaaatgcaaacgCTCTATTGCACTCTGAATGTGTGGCTATGAAGCTTCTAAAGTTGTATGGAGTTTATATGTGAGTTTGTAGGAGAGAAAGTAGTCGATGTTAAAGGAGAGGAATGCTTGACAAGTGTCTGTCATGTACAGGGATCCAAAAACGCACAGGGAggcagtattttgtttttattaagacaTGGGCACCTGTTCTCTATGTGGGAAGCGGTAGTTTCTGAACACAAAGTTCTCTGCTTCTTTCTAATAGGTTATGGGACTAATATCACTAACTCCCCATAGAGAGCAGAGTTTAATAAACATTCACGATTGCACAGGAACCTACCACGGCTGGCTGTCTCAGGTTGGACGGATATCTGTCCCACAACCGAGCACCTCCTCACAGGGCTCTGTAGACAAAACCAAATGGGGAGCGGTACTGCGGTCGACTGATCAAAAGTCAGGAGGGTTTCCCAATTTCAGATCTCTCTGGAGGTGGGCTCACCGGACACCAATAGTCCTCGCTGCAGTCTTCTCTGCTGATATTACATGGGATAAGTGGGGGATTATTAAATCTTTTAGCTACAGTGgagatttgttttgtctccaatGGGTGAAAAAGGAGTTGTGACCCAGCTTAAAAGATACAAAGTCTTTTTAAGAATTGGATTCCAGGCACCTGCGTTGGGGGTCTGGTGCCATTGTGAAAGACAGACATGGTCGGTGTATTGTAAGCAGTGACTCTGTAGATCCAAGGTCCCGGGGACGGTTACTGTTCTTATGTATTGACCTCTGTCTTCAATGCATCGCAATATTGTCCTCCTACACTTGGATCAGTGTGATCACTCCGCTGTCTTCCATCTGTACACGTATATTATGAGGGTATCGCACGGGATCGATAgttcacagcactgcagtggtgggtgggggggtctgcGGGAGTCGAACAGGTCCGTTCAGAGCTTGGGGAAAGGCAGTCTTTGAACCGTCGCCCTCCCCCGCCTGTGAACGACACTCTGGATGTTTGCTGATCGTCTTCATTTATCTGTCTTTCACTTCCACCAGCACTGATCCTGCCTGACTGCAGTCACTGTACACTGCCAGACACTGAATAACAAAGACACAACTGTTgcctgtttatatatatatttatttttgtatgactAACTTCATAGAGCTAGAGGATTTTTGAGATGAGGTTCTGAGCTTTTGCAAGGAGGACTCCTCTGCTATTttgtttggggtggggggggagaggacCCTGTGTGTTGTGTACTTCTGCAGAATATCACTTGACCagcataataatgataatgatcgggggggggggttgttttccGCCTGACCAATCGTAAGGAGACTCGGCTAGATTGTATTTATACGATATGCATCATGTAAATAGTAGCTCATTTCAAGTTAAAGGAGGGGGAGGTCTTTTGTGAAGGATGCATGTCCCATCATGTCGAGCAAAAAAAGGCCTTGCCCTGTGGATCAACCCTCtcttcatgtatgtattttttctgtggtCTGTCCTGCCAGAAGgtttaatttcccttttcttgCTCTCAACAAGCCCTGCCCAAAACTGCATcactttaaaatctgttttattatgcAATAACTCCTCCAACTATTATGCCTCCAACAAATAGAAACCCTGAAGGATATACGGACACATCGTTTGAGCAAGAGAGCAGGAAAGTGTGAAACCGACTGGTGCCGGGCTGGCCCAGAAGGATGGCTATCTACTTCAGTTATTGAAGCATGCTCACTGTACACGGTGGACAAAAATCTACTTTGAATTAGTTGGTTCTTCTTTTCTTTGCACAAAGGAAGCTAAATGTGGCCGTGCTTTCTCCCCTCTTCGGGTGCATGCCTCCAGTAGGTAGAGGTTCTCGCTGTGGTTTAGCCCAGAGACGTCACCGTGTGGGGTCTCTATTTAGGCTTCCCAGGAGGGCACCTACGGCCCTCGTGTTGCGACTCCACTGTCAAGCCTCCACTCCACTCTAGAGATTTACGCCAGCACATACAGTCTGAGTGTCGCAATTTCTTCCATATGTGGAAGACATTATGAttctaatgttattttttcggttcacatgtatttatttacacgtTGTCAACAtatgtactgtactttaaagCTGGGCGAGCTGCTGCTTAGTCTAAGCGGAGGAATGAGATTAATAAAATTCCTAGGCTGATTTGTGGGCTGATGTGTCTTGTGTCCCGTCTGAGCTGTTGAATGG

Function

symbol description
si:ch211-195b13.1 Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; neuron projection morphogenesis; and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: serine/threonine-protein kinase Sgk1-like

GO: NA

KEGG:

id description
K13302 SGK1; serum/glucocorticoid-regulated kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010872 True 4175 mRNA 0.51 13 3034347 3044090

Neighbor

gene id symbol gene type direction distance location
AMCG00010871 NA coding downstream 2785 3012593 ~ 3031562 (-)
AMCG00010873 LOC101163182,LOC101080136,LOC107569308,LOC107754925,LOC108229131,LOC107395731,LOC103130392 coding downstream 50275 2976456 ~ 2984072 (-)
AMCG00010868 NA coding downstream 63332 2959275 ~ 2971015 (-)
AMCG00010867 NA coding downstream 88836 2944195 ~ 2945511 (-)
AMCG00010859 NA coding downstream 267078 2762526 ~ 2767269 (-)
AMCG00010877 mtfr1l coding upstream 59884 3103974 ~ 3107204 (-)
AMCG00010878 NA coding upstream 84162 3128252 ~ 3141209 (-)
AMCG00010880 znf593 coding upstream 97317 3141407 ~ 3143759 (-)
AMCG00010879 dylt1,dynlt1 coding upstream 124335 3168425 ~ 3171989 (-)
AMCG00010883 LOC106588496,LOC103393992 coding upstream 146731 3190821 ~ 3209564 (-)
G102834 NA non-coding downstream 43099 2990647 ~ 2991248 (-)
G102816 NA non-coding downstream 79372 2954760 ~ 2954975 (-)
G102785 NA non-coding downstream 201164 2789470 ~ 2833183 (-)
G102725 NA non-coding downstream 359211 2674563 ~ 2675136 (-)
G102651 NA non-coding downstream 596649 2386723 ~ 2437698 (-)
G102887 NA non-coding upstream 101174 3145264 ~ 3145687 (-)
G102888 NA non-coding upstream 115747 3159837 ~ 3160036 (-)
G102889 NA non-coding upstream 116493 3160583 ~ 3160897 (-)
G102890 NA non-coding upstream 117007 3161097 ~ 3161512 (-)
G102920 NA non-coding upstream 224452 3268542 ~ 3269769 (-)
G102762 NA other downstream 256324 2739816 ~ 2778023 (-)
G102774 NA other downstream 273083 2758478 ~ 2761264 (-)
AMCG00010843 NA other downstream 537901 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1999473 1033830 ~ 1034874 (-)
G102434 NA other downstream 2056220 975553 ~ 978127 (-)
G102902 LOC104921322 other upstream 135880 3179970 ~ 3182619 (-)
G102990 NA other upstream 276723 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 277286 3321376 ~ 3327559 (-)
AMCG00010901 NA other upstream 509896 3553986 ~ 3574815 (-)
G103112 NA other upstream 1125703 4169793 ~ 4185974 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000391 prkx coding NC_007112.7 CM002885.2 33217911 ~ 33283689 (+)
rainbow trout (Oncorhynchus mykiss) LOC110506602 LOC106595809 misc NC_048567.1 CM023221.2 2243487 ~ 2249509 (-)
rainbow trout (Oncorhynchus mykiss) G877767 NA non-coding NC_048574.1 CM023228.2 31142604 ~ 31147412 (-)
mexican tetra (Astyanax mexicanus) G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding NC_035917.1 CM008320.1 211835 ~ 231061 (+)