AMCG00010873 (LOC101163182,LOC101080136,LOC107569308,LOC107754925,LOC108229131,LOC107395731,LOC103130392)


Basic Information

Item Value
gene id AMCG00010873
gene name LOC101163182,LOC101080136,LOC107569308,LOC107754925,LOC108229131,LOC107395731,LOC103130392
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2976456 ~ 2984072 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010873
CGGGGACATGCCGAGGGTCTACATCGGCAGACTGAGCTACCAAGCCCGGGAGAGGGACGTCGAGAGGTTCTTCAAAGGCTACGGGAAGATCCTGGAGGTGGACCTGAAGAACGgGTATGGCTTTGTGGAGTTCGATGACCCCCGTGACGCCGATGACGCAGTCTATGAGCTCAACGGCAAGGACCTGTGCGGGGAGCGCGTCATCGTGGAGCACGCGCGGGGGCCGCGGCGCGACGGCAGCTACAGCTCGGGCCGCAGTGGATATGTATATAGGCGGAGTGGGAGAGATAAGTATGGCCCGCCAACTCGGACGGAGTACCGCTTGATAGTGGAGAATCTCTCCAGCCGCTGCAGCTGGCAGGACCTAAAGGATTACATGCGCCAGGCCGGGGAGGTGACGTACGCAGACGCCCACAAGGGACGGAAGAACGAGGGGGTGATCGAGTTCAAGTCCTACTCCGACATGCGGCGGGCCCTGGAGAAGTTGGACGGCACCGAGGTCAACGGCAGGAAGATCCGTCTGATCGAGGACCGGCCGGGGTCCCGCCGCCGGCGCTCCTACTCCCGCAGCCGCTCACGGTCTCGGTCCAGGAGCCGCCGATCTCGCAAAAGCCGCAGTCGCAACGGGAGCAGCAAGAGCAGCCGCTCCAAGAGCCGGTCGAAGAGCCCGTCGCGCTCCAGGTCCGTGTCTCGCTCCCGGAGCCGCAGTCAGAGCCGCAgcaagaagaaggagaagagcCGCAGCGGCAGCCGGAGCCggggcgaggaggaggaggacggcCGCGAGAGGAACGACAAGGACCGCCACCGCAAGAGCCGCAGCCGGAGCAAGGAGGCCAGGGCGCGGGGCCGCAGCGAGAGCCGCGAGGAGAGGAAGGGCCACAAGAGGAGCCGCAGCCAGAGGAGCAAGAAACGGAACAAGCGGGAGAACAAGAGGAACAGGAGAGATGAGTCCCGCTCCCGCTCCCGCTCCCGCTCCCGGTCCAGGTCCAAGGATAAGAAAGAGCCGGCCCGGAAAGCTGTCTCCAGAAACCAGGAGTCCAAAAGCGACGCAGAGGAGGATGGTGGAGGAGGAGGCTCCCACCCCCGCTCCCGCTCGGCCTCCCGCTCCAAGCCCAAGATCAAGTCCCCCTCGCCCTCGAAAGCCCGGTCTCACTCCCGATTGGGTTCCCACTCGGCCTCGCACTCCCGCTCCAGATCTCGCTCCCGGTCCTgattctctctcccttttttctacctccctcccctcccggtttttcctcttttcctcgGTCTGTGGAGAAGGGGTTTCTGATTGGCTGTCAGGGTCTCCCGAGCACAGAACGCTTAATATCAGTTCTAAATATTTTTgcgttttattttcttcattttcaggTTTAATGAGTCTTGTCTTCTTAGTGTCGAGACGTTTGTTGAGTGCAGGTAGTCAGCGGACATAGACACGCTGTTGCCAGGATAGTTCTGAATGTATTTCAAGAATA

Function

NR:

description
serine/arginine-rich splicing factor 4-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010873 True 1481 mRNA 0.62 6 2976456 2984072

Neighbor

gene id symbol gene type direction distance location
AMCG00010868 NA coding downstream 5441 2959275 ~ 2971015 (-)
AMCG00010867 NA coding downstream 30945 2944195 ~ 2945511 (-)
AMCG00010859 NA coding downstream 209187 2762526 ~ 2767269 (-)
AMCG00010858 wdtc1,LOC106605082,LOC106583467 coding downstream 252656 2712527 ~ 2723800 (-)
AMCG00010857 tmem222,LOC103368846,LOC106570241 coding downstream 269835 2694405 ~ 2706621 (-)
AMCG00010871 NA coding upstream 28521 3012593 ~ 3031562 (-)
AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding upstream 50275 3034347 ~ 3044090 (-)
AMCG00010877 mtfr1l coding upstream 119902 3103974 ~ 3107204 (-)
AMCG00010878 NA coding upstream 144180 3128252 ~ 3141209 (-)
AMCG00010880 znf593 coding upstream 157335 3141407 ~ 3143759 (-)
G102816 NA non-coding downstream 21481 2954760 ~ 2954975 (-)
G102785 NA non-coding downstream 143273 2789470 ~ 2833183 (-)
G102725 NA non-coding downstream 301320 2674563 ~ 2675136 (-)
G102651 NA non-coding downstream 538758 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 613346 2362880 ~ 2363110 (-)
G102834 NA non-coding upstream 6575 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 161192 3145264 ~ 3145687 (-)
G102888 NA non-coding upstream 175765 3159837 ~ 3160036 (-)
G102889 NA non-coding upstream 176511 3160583 ~ 3160897 (-)
G102890 NA non-coding upstream 177025 3161097 ~ 3161512 (-)
G102762 NA other downstream 198433 2739816 ~ 2778023 (-)
G102774 NA other downstream 215192 2758478 ~ 2761264 (-)
AMCG00010843 NA other downstream 480010 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1941582 1033830 ~ 1034874 (-)
G102434 NA other downstream 1998329 975553 ~ 978127 (-)
G102902 LOC104921322 other upstream 195898 3179970 ~ 3182619 (-)
G102990 NA other upstream 336741 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 337304 3321376 ~ 3327559 (-)
AMCG00010901 NA other upstream 569914 3553986 ~ 3574815 (-)
G103112 NA other upstream 1185721 4169793 ~ 4185974 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021431 srsf6a coding NC_007134.7 CM002907.2 4260458 ~ 4271984 (+)