XLOC_002803 (SLC46A3)


Basic Information

Item Value
gene id XLOC_002803
gene name SLC46A3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26502334 ~ 26512993 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005195
TGTTAACTGTCAGGGAGCTTGCAGAAGAGTCTCGGCGGATGAGAGCAAATCTGTCTACATTTGCTTTGATGAAGACGTACGTCCTCAGTATATCTGCGCTGTCCCTCACATCGTCGACGACACTATGAAGCGACTGTACTTCATCGAGCCCGTCGTCGCGATTTACGCGTTTGCCAGTTTTATGCTTTATCCTCTCATCCAGCAGTATGTGTATCGCAGACTGTGGCTGGAGATCACAAACTCGACCTATCCAGTGTCCGAAAACACTTCTCAATGTGCCGCCAACAGCAGCAACCACACCAGCCGACAAGAGgAGGTGCAGAAAGCAGCTTCTCTGTTCTCCATGTACACTGATTTATCCTCCATGATCCCCAGCCTCATCGTGACCCTCCTCCTGGTGTCCTACAGCGATCAGCGTGGCCGAAAGATCACCATTATCATGCCTCTCATTGGCACTCTGATCTACACGCTTTCATTCCTCACCGTCTCGTTCTTCCAGCTCAACCTTTACCTCCTTATTGTTGCCTCATTCGTAAGTGCCCTCTTTGGGGGCATCGGCACCATGTTAGGTGGCTGCTTCTCCTATGTGGCTGATTTGTGTGAAGATGGCAAACAAAAAACCCTTCGGATGGCTGTAGTCGACATGATGATTGGCATGCTGGCAGGTGTAGCTTCAATCTCCACTGGCTACTTCTTACACGCAGCCGGGTTCAACTGGCCGTTTTTTACCTCTGCCATATTTCAGGTCGTTAATTTACTATACGCCATCTTTATTCTGGAAGAAACTAGAGTCATTGATAGATCGGAGACCTTGGCTTGTTGTCAGGCCTTGCGGAATCTGGCATGCAGCATCTACAGCTTGTTTGCTGGAGGAAGTAGACGAAGAACATGGGTTCTTGTGCTGTTGATTATCACCTTTTCCTCCTTGTCTTTTGTCAATACTGGAGGTTTGTCCATATTCACGCTTTATGAGCTCAATGAGCCGCTGTGTTGGACTGAGATTCTTGTCGGATATGGCTCTGCTGCCAGCACATCTATTTTTATTACAAGTTTTGTTGGCGTGTTTTTGTTTTCTCTCTGCCTGCCTAACATCGCCATCGCCTTCATTGGGATGCTTTCAGTCGCTGTTAGCATGTTGATGACCGGCTTCGCCAAGACCACGCTCACAATGTTCCTCGTGAGAATTCCTGCTATGTTTGCCATCATGCCATTCCCTGTCCTGCGTTCGATGATGTCAAAGGTCGTCTCAAAGTCTGAACAGGGAGCGCTGTTCGCCTGTGTGGCCTTCACAGAAACGCTGAGCACCAATGGGTCTGCTGCCAGTTTTAGCAGGATCTATGCAGCCACTGTGGCTTGGTGTCCAGGTTTTGTCTTCCTACTGGGTGCCGGACTCTGTCTCATTCCCATGAGTTTACTGGGAATCCTTAAGTGTGTCCATCCATTGGATCCTAATGACACTCAAGCACTCTTATCTGAAGATGGGACTGAAGCATCAGATGACCCACCTGTAGCGTAA
>TCONS_00005197
GaaatataacaaattaattaagtgCAAGATCAACAGAATGAATAACCACACTGTTTTGAATAGCTCCTAAAATCCCATTACCATCGCAATTTCATGAGTTGTCCCGCCCGTTTTGGGTGACTGGCAGCTTCACCAACCAATGATTTGAAATCCTTAAATTCAACCGACCAATCAGGTAAAGACATCCAGGAAACCGGCGTTTCATAAGAGGTTGCGAGATGTCATGTTTCATAAACAAAACAGAGAACAACTGTTAACTGTCAGGGAGCTTGCAGAAGAGTCTCGGCGGATGAGAGCAAATCTGTCTACATTTGCTTTGATGAAGACGTACGTCCTCAGTATATCTGCGCTGTCCGTAAGTAACGTTAAACTGGATAGACTGGTAGCTGTCCAAGGTGGTCGTCAGGTTGACCGGTTAATTTAAGCTGTCATGATGCAAGTTGTTTAGGGGTTGATGGTTAGCCAATTACGTAGATCCGAGATTAGTGTGATTATGGTAGATTGAtgtaattgtttgttttattcttgtcTTTGCAGCTCACATCGTCGACGACACTATGAAGCGACTGTACTTCATCGAGCCCGTCGTCGCGATTTACGCGTTTGCCAGTTTTATGCTTTATCCTCTCATCCAGCAGTATGTGTATCGCAGACTGTGGCTGGAGATCACAAACTCGACCTATCCAGTGTCCGAAAACACTTCTCAATGTGCCGCCAACAGCAGCAACCACACCAGCCGACAAGAGgAGGTGCAGAAAGCAGCTTCTCTGTTCTCCATGTACACTGATTTATCCTCCATGATCCCCAGCCTCATCGTGACCCTCCTCCTGGTGTCCTACAGCGATCAGCGTGGCCGAAAGATCACCATTATCATGCCTCTCATTGGCACTCTGATCTACACGCTTTCATTCCTCACCGTCTCGTTCTTCCAGCTCAACCTTTACCTCCTTATTGTTGCCTCATTCGTAAGTGCCCTCTTTGGGGGCATCGGCACCATGTTAGGTGGCTGCTTCTCCTATGTGGCTGATTTGTGTGAAGATGGCAAACAAAAAACCCTTCGGATGGCTGTAGTCGACATGATGATTGGCATGCTGGCAGGTGTAGCTTCAATCTCCACTGGCTACTTCTTACACGCAGCCGGGTTCAACTGGCCGTTTTTTACCTCTGCCATATTTCAGGTCGTTAATTTACTATACGCCATCTTTATTCTGGAAGAAACTAGAGTCATTGATAGATCGGAGACCTTGGCTTGTTGTCAGGCCTTGCGGAATCTGGCATGCAGCATCTACAGCTTGTTTGCTGGAGGAAGTAGACGAAGAACATGGGTTCTTGTGCTGTTGATTATCACCTTTTCCTCCTTGTCTTTTGTCAATACTGGAGGTTTGTCCATATTCACGCTTTATGAGCTCAATGAGCCGCTGTGTTGGACTGAGATTCTTGTCGGATATGGCTCTGCTGCCAGCACATCTATTTTTATTACAAGTTTTGTTGGCGTGTTTTTGTTTTCTCTCTGCCTGCCTAACATCGCCATCGCCTTCATTGGGATGCTTTCAGTCGCTGTTAGCATGTTGATGACCGGCTTCGCCAAGACCACGCTCACAATGTTCCTCGTGAGAATTCCTGCTATGTTTGCCATCATGCCATTCCCTGTCCTGCGTTCGATGATGTCAAAGGTCGTCTCAAAGTCTGAACAGGGAGCGCTGTTCGCCTGTGTGGCCTTCACAGAAACGCTGAGCACCAATGGGTCTGCTGCCAGTTTTAGCAGGATCTATGCAGCCACTGTGGCTTGGTGTCCAGGTTTTGTCTTCCTACTGGGTGCCGGACTCTGTCTCATTCCCATGAGTTTACTGGGGTAA
>TCONS_00005196
GaaatataacaaattaattaagtgCAAGATCAACAGAATGAATAACCACACTGTTTTGAATAGCTCCTAAAATCCCATTACCATCGCAATTTCATGAGTTGTCCCGCCCGTTTTGGGTGACTGGCAGCTTCACCAACCAATGATTTGAAATCCTTAAATTCAACCGACCAATCAGGTAAAGACATCCAGGAAACCGGCGTTTCATAAGAGGTTGCGAGATGTCATGTTTCATAAACAAAACAGAGAACAACTGTTAACTGTCAGGGAGCTTGCAGAAGAGTCTCGGCGGATGAGAGCAAATCTGTCTACATTTGCTTTGATGAAGACGTACGTCCTCAGTATATCTGCGCTGTCCCTCACATCGTCGACGACACTATGAAGCGACTGTACTTCATCGAGCCCGTCGTCGCGATTTACGCGTTTGCCAGTTTTATGCTTTATCCTCTCATCCAGCAGTATGTGTATCGCAGACTGTGGCTGGAGATCACAAACTCGACCTATCCAGTGTCCGAAAACACTTCTCAATGTGCCGCCAACAGCAGCAACCACACCAGCCGACAAGAGgAGGTGCAGAAAGCAGCTTCTCTGTTCTCCATGTACACTGATTTATCCTCCATGATCCCCAGCCTCATCGTGACCCTCCTCCTGGTGTCCTACAGCGATCAGCGTGGCCGAAAGATCACCATTATCATGCCTCTCATTGGCACTCTGATCTACACGCTTTCATTCCTCACCGTCTCGTTCTTCCAGCTCAACCTTTACCTCCTTATTGTTGCCTCATTCGTAAGTGCCCTCTTTGGGGGCATCGGCACCATGTTAGGTGGCTGCTTCTCCTATGTGGCTGATTTGTGTGAAGATGGCAAACAAAAAACCCTTCGGATGGCTGTAGTCGACATGATGATTGGCATGCTGGCAGGTGTAGCTTCAATCTCCACTGGCTACTTCTTACACGCAGCCGGGTTCAACTGGCCGTTTTTTACCTCTGCCATATTTCAGGTCGTTAATTTACTATACGCCATCTTTATTCTGGAAGAAACTAGAGTCATTGATAGATCGGAGACCTTGGCTTGTTGTCAGGCCTTGCGGAATCTGGCATGCAGCATCTACAGCTTGTTTGCTGGAGGAAGTAGACGAAGAACATGGGTTCTTGTGCTGTTGATTATCACCTTTTCCTCCTTGTCTTTTGTCAATACTGGAGGTTTGTCCATATTCACGCTTTATGAGCTCAATGAGCCGCTGTGTTGGACTGAGATTCTTGTCGGATATGGCTCTGCTGCCAGCACATCTATTTTTATTACAAGTTTTGTTGGCGTGTTTTTGTTTTCTCTCTGCCTGCCTAACATCGCCATCGCCTTCATTGGGATGCTTTCAGTCGCTGTTAGCATGTTGATGACCGGCTTCGCCAAGACCACGCTCACAATGTTCCTCGTGAGAATTCCTGCTATGTTTGCCATCATGCCATTCCCTGTCCTGCGTTCGATGATGTCAAAGGTCGTCTCAAAGTCTGAACAGGGAGCGCTGTTCGCCTGTGTGGCCTTCACAGAAACGCTGAGCACCAATGGGTCTGCTGCCAGTTTTAGCAGGATCTATGCAGCCACTGTGGCTTGGTGTCCAGGTTTTGTCTTCCTACTGGGTGCCGGACTCTGTCTCATTCCCATGAGTTTACTGGGGTAA

Function

symbol description
slc46a3 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC46A3 (solute carrier family 46 member 3).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-100105-2 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC46A3 (solute carrier family 46 member 3).

Ensembl:

ensembl_id ENSDARG00000079933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005195 False 1516 mRNA 0.49 6 26502334 26512742
TCONS_00005197 False 1856 mRNA 0.47 4 26504792 26512993
TCONS_00005196 True 1674 mRNA 0.48 5 26504792 26512993

Neighbor

gene id symbol gene type direction distance location
XLOC_002802 NA coding downstream 55163 26441052 ~ 26447171 (-)
XLOC_002801 dchs1b coding downstream 72166 26268790 ~ 26430168 (-)
XLOC_002800 fhdc3 coding downstream 276106 26190807 ~ 26226228 (-)
XLOC_002799 trim3b coding downstream 322529 26129830 ~ 26179805 (-)
XLOC_002798 trpc4a coding downstream 642232 25829262 ~ 25860102 (-)
XLOC_002804 fgf13b coding upstream 203369 26716362 ~ 26744166 (-)
XLOC_002805 mcf2b coding upstream 249800 26762793 ~ 26766780 (-)
XLOC_002806 mcf2b coding upstream 258054 26771047 ~ 26793448 (-)
XLOC_002807 NA coding upstream 323843 26836836 ~ 26872413 (-)
XLOC_002808 CR545465.2 coding upstream 379574 26892567 ~ 26895076 (-)
XLOC_002793 NA non-coding downstream 810664 25690872 ~ 25691670 (-)
XLOC_002792 NA non-coding downstream 815116 25686901 ~ 25687218 (-)
XLOC_002790 NA non-coding downstream 1002860 25494173 ~ 25499474 (-)
XLOC_002788 NA non-coding downstream 1111661 25380998 ~ 25390673 (-)
XLOC_002809 NA non-coding upstream 388279 26901272 ~ 26902305 (-)
XLOC_002813 NA non-coding upstream 487569 27000562 ~ 27002614 (-)
XLOC_002816 NA non-coding upstream 644944 27157937 ~ 27162145 (-)

Expression


Co-expression Network