LOC110536377 (tesc)


Basic Information

Item Value
gene id LOC110536377
gene name tesc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 74251421 ~ 74262706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622134.2
AAGGACACAGTCGATTCATTCTGAATTGACTCATGTAAAAAAAATCGATATGTATTCCTCCACAATGGTACACTGTTTTAGGACCTTGGGGAAGTCAGCACATCGTCTCTCCCAATGGACCATAATAAAGAGTATGTTACTAACTTCCTTATGAAAGCAGAGGAAAGAGCTTCTTGGTACTAGTGAGGACAGTACAACTCAAGTAGTTTTACCTGCGGTTAAGATCATAGTGCGCTCCTGAAATAACTTCAATGCGCATTTGCAGCTCTTTTGAGAATAATCGCAATGGGAGCCTCGCAGTCTGCGGGCACTGAACACGAGTTCCAAGATCTGGCTGATCGAACTGGATTTTCCCTGGAGCAGATTGGCAACATCAACAAGAGATTCAGACAGCTGAGTAACAATGAGGAGACACTAAGTCGAGAGGatttggccagcatccctgctcTAGATAACAATCCAATCCGGGCTCAAATTATTAATGCATTCTTTGATAAAAGAAACCTCCATCAGAATGAGACGGGTACTGTCCAGGAGATTGGCTTTGAGGAGTTCCTTATGGTGATGACTCACTTCCGCCCAGCAGCCATGGGCATaacggaggaggagagggagaacctGAGGAGGGACAAACTACGATTTCTGTTCAACATGCATGACACAGACAGCGACGGCACCATCAACCTGGAGGAGTACAGACGGGTGGTGGAGGAGCTCCTATCTAAGGCTGGCACTATCGGACAGGAGACCGCCAAAGCCATCGCAGACGCTGCCATGCTGGAAGTGGCAAGCACTACAAGGGGCAAAATGGAACCTGATGAATTCTATGAAGGAATCACTTTTGAAAATTTTCTACAGATTCTAAACACCTTCGATATTGAGACGAGGATGCATGTTCGCTTCTTGCACATGGACACTGCAACCTTGCGATGTGGAAAATCTAAATGAGCCTCGGTCTCCTTTAAGAGACATCGTTATGGTACTGCTGTTTTTTGTTGAATTAGTCTCTCCCGTCTTCCTCTGTAATAAGGCCAAATACTTTTCATATGCACTAAAGTGTAATTAAATACCTTTCATATGCACTAATATTTAAATACAATTAATATGCACTAATGTTTTCATACTTTTAATGATTAATGGGAAATTATGATCAGAATAATACATTGTGATACATGACATGTTAATGCACAATATTATCTACATATACCCCCCTCAGCCTTCatacccccctcctcccttcataCCGCCCCCCTCATGTCAATGTTATGTTTACAGTACTAACATTTTGAGTGCCTAGATGTTCACATGACCTGTTATGTGGATCACTTCTGAGGATCAGAGTTGGCAATCGCATCCAGGGTCACTATTATTCTGGCTCACATTCAGAGCCTGAGACACGGGGCACAGTGCATTCCAACAGGGCTAGAGACTTGGGACTCATTTATCTACTTCACCGAGCTTTATTATGTCTGTGCTTTTCCAATTGAAACACTGGACACTGTCCTCTTCTATGGCCTTGGTAGGGAGACTTACAGCACTCTGTAAGTTGTAAGTTTCACCTTCCTACCCTCTAAAACCAAAGAATAACCACTTAAATGTACTACTTCTTTGTTTAAGTTGAATTTCTAATACATTAAATGGATATTGTGCCTTGTGCCCAAAGAAGTTGTAGTAGCCTTGACAGTAATTTATATACATTTTCTataaattcaaaataaaaaattgtgATGAAAAATGTCAACATTA

Function

symbol description
tesc Enables calcium ion binding activity. Involved in several processes, including cellular response to retinoic acid; positive regulation of macromolecule metabolic process; and positive regulation of myeloid cell differentiation. Located in several cellular components, including cytosol; lamellipodium; and nucleoplasm.

NR:

description
calcineurin B homologous protein 3-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622134.2 True 1746 mRNA 0.42 8 74251421 74262706

Neighbor

gene id symbol gene type direction distance location
LOC110536376 fbxo21 coding upstream 237 74237724 ~ 74251184 (+)
zgc:112294 LOC106579817 coding upstream 240178 74007753 ~ 74011243 (+)
selenoe fep15 coding upstream 245818 74001387 ~ 74005603 (+)
LOC110536373 LOC106579808 coding upstream 268462 73949572 ~ 73982959 (+)
hscb LOC106579811 coding upstream 954135 73283122 ~ 73297286 (+)
spring1 cssa20h12orf49 coding downstream 49825 74312531 ~ 74316581 (+)
LOC118937457 NA coding downstream 256679 74519385 ~ 74521046 (+)
rfc5 rfc5 coding downstream 426749 74689455 ~ 74697615 (+)
pebp1 pebp1 coding downstream 444594 74707300 ~ 74711617 (+)
LOC118937390 NA coding downstream 460168 74722874 ~ 74731148 (+)
G1016554 NA non-coding upstream 60441 74190775 ~ 74190980 (+)
G1016364 NA non-coding upstream 199412 74048916 ~ 74052009 (+)
G1016329 NA non-coding upstream 244804 74006296 ~ 74006617 (+)
G1016617 NA non-coding downstream 35197 74297903 ~ 74298263 (+)
G1016619 NA non-coding downstream 38162 74300868 ~ 74301072 (+)
G1016620 NA non-coding downstream 38710 74301416 ~ 74303560 (+)
G1016632 NA non-coding downstream 59736 74322442 ~ 74324226 (+)
G1016633 NA non-coding downstream 62290 74324996 ~ 74325469 (+)
LOC110535110 LOC106579812 other upstream 1082979 73155366 ~ 73254792 (+)
G1014834 NA other upstream 1490476 72760521 ~ 72760945 (+)
G1013922 NA other upstream 2371749 71879296 ~ 71879672 (+)
G1013617 NA other upstream 2410951 71838302 ~ 71840882 (+)
LOC110536353 LOC106580623 other upstream 2454106 71738585 ~ 71797315 (+)
G1017593 NA other downstream 1037632 75269723 ~ 75328737 (+)
LOC110536406 LOC106570821 other downstream 2225802 76396096 ~ 76600566 (+)
G1018678 NA other downstream 2261432 76524138 ~ 76525567 (+)
G1019189 ptar1 other downstream 2555799 76818505 ~ 76821968 (+)
mamdc2a LOC106570826 other downstream 2627021 76889699 ~ 76939449 (+)

Expression


Co-expression Network