XLOC_002861 (vps26bl)


Basic Information

Item Value
gene id XLOC_002861
gene name vps26bl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31800212 ~ 31805923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005299
AATTATTTCTGAAGCTTGTGCCTGTTTTTACATTGCTGGAAAATCCTCCGCAGGTATTAATTCAGTCGCCGTATGAAGAATTAGCCCACGTTTGCTTGTAAGCAGCATATTATAAAGGCGCATGCATCGCTGCAGATCGCTAGTGAAGAAGACGGGATTGTAACGTTATATTGATGTGGAATTGGACCAGGTGTTAGAATTCAAAAGCAGTCCAATCCAGCACAAGTGTCGGGATGAGCTTCTTCAGTTTCGGACAAAGTGCTGAGATTGACATAGTTCTGAATGATGCCGAGACGAGAAAAAAGGCCGAGCACAAAACAGAGGATGGGAAAAAAGACAAATACTTTCTGTTTTACGACGGAGAGACTGTCTCGGGGAAAGTAAACGTAACACTGAAGACCCCAGGAAAGAGGCTCGAGCATCAGGGCATCAAAATAGAGTTCATCGGGCAAATCGAATTGTACTACGACAGAGGAAACCATCATGAGTTTGTCTCTCTGGTAAAGGATTTAGCTCGGCCTGGAGAAATGGCTCAGTCGCAGACTTTTGATTTTGAGTTCACGCATGTGGAGAAACCGTATGAGTCCTACACAGGCCAGAATGTAAAACTACGCTATTTCCTGCGGGCTACCGTCAGCCGGAGACTGAATGACATCTGTAAAGAGATGGACATCGTTGTGCACACACTCAGCACATATCCAGAGCTCAACTCCTCCATTAAGATGGAGGTGGGAATTGAGGACTGTCTGCACATCGAGTTCGAATACAACAAGTCCAAGTATCACTTGAAAGATGTAATTGTGGGAAAGATCTATTTCCTTTTGGTGAGAATTAAGATCAAACACATGGAAATCGATATTATTAAACGGGAGACGACGGGGACGGGGCCAAACGTGTACCATGAGAATGACACCATTGCAAAATATGAGATCATGGATGGAGCTCCAGTTCGAGGTGAATCCATCCCTATCCGTCTTTTTCTGGCTGGATATGAGATGACGCCCACCATGAGGGATATTAATAAGAAATTCTCTGTTCGTTATTACCTGAACCTTGTACTCATTGATGAAGAAGAGAGGCGTTACTTCAAACAACAGgaGATTACACTATGGAGGAAGGGAGACGTAGTGAGGAAGAGCATGTCTCATCAAGCTGCCATTGCCTCTCAGCGCTTCGAGGGCTCAGAGAAAACACTTCCTCAAGCGAAAGAGGACAGCAACTAAACCTAATCACGTCAGCTCATCATctcaagtgtgtgtatgtgttagagaaagagagagtgtgagtgtgtgtttatagatttaaagaaaaaagtgTGCTCTTAATATAGACTGGGCAGCGTAAACATTATATTTCACATTcctaaacattatagtttatgATCAACAAGTAGCTTTTAAAAAGGGATGAATGTGAAAAGCGAAAACActgattccaaaaaaaaaaaaaa

Function

symbol description
vps26bl Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-112 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

Ensembl:

ensembl_id ENSDARG00000055433

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005299 True 1450 mRNA 0.43 6 31800212 31805923

Neighbor

gene id symbol gene type direction distance location
XLOC_002860 fez1 coding downstream 17596 31738501 ~ 31782616 (-)
XLOC_002859 robo3 coding downstream 237163 31298972 ~ 31563049 (-)
XLOC_002858 NA coding downstream 505206 31262852 ~ 31295006 (-)
XLOC_002857 pknox2 coding downstream 579654 31019607 ~ 31220558 (-)
XLOC_002856 panx3 coding downstream 783406 30997238 ~ 31016806 (-)
XLOC_002862 NA coding upstream 271888 32077811 ~ 32084624 (-)
XLOC_002863 NA coding upstream 410490 32216413 ~ 32250846 (-)
XLOC_002864 uvrag coding upstream 458934 32264857 ~ 32494499 (-)
XLOC_002865 dgat2 coding upstream 696038 32501961 ~ 32524771 (-)
XLOC_002866 mogat2 coding upstream 728891 32534814 ~ 32610776 (-)
XLOC_002854 CT737197.1 non-coding downstream 1268955 30531143 ~ 30531257 (-)
XLOC_002845 CU861448.1 non-coding downstream 2092030 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 2309125 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 2662208 29128202 ~ 29138004 (-)
XLOC_002867 NA non-coding upstream 778762 32584685 ~ 32591462 (-)
XLOC_002870 NA non-coding upstream 870887 32676810 ~ 32678245 (-)
XLOC_002871 NA non-coding upstream 973957 32779880 ~ 32780290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding CI01000304 null 15340565 ~ 15347178 (-)