XLOC_002871



Basic Information


Item Value
gene id XLOC_002871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32779880 ~ 32780290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00006082
CCATCATGACCTGTGAATCTCCCAGCCAGGTCACGTACAGCGTGCGACCCCTCAGAAAAGTCACAACCCCTGTGGTGCCACAGCGCAGGTTCTGTTCCAGACACATGCAGACCTGTTTGAAGGAGTGACACAAGGCTTCTCCTGCGTCCTGGCTGAACATTTCTTGCCTGACCAGATTAACATGCAGGTGATTGGCGGCGTAGTTGGCAGCGTCCACCCCGCCGTGACCATCAAACACGGCAAAGTAGGCCTGCTCTTCTTGATCCTGAAATAGTAAGTAACAGTGATTAAAAGGGTCATATTGT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00006082 True 305 lncRNA 0.52 2 32779880 32780290

Neighbor


gene id symbol gene type direction distance location
XLOC_002870 NA coding downstream 101635 32676810 ~ 32678245 (-)
XLOC_002869 atg101 coding downstream 116121 32657496 ~ 32663759 (-)
XLOC_002868 umodl1 coding downstream 139939 32613706 ~ 32639941 (-)
XLOC_002866 mogat2 coding downstream 169104 32534814 ~ 32610776 (-)
XLOC_002867 NA coding downstream 188418 32584685 ~ 32591462 (-)
XLOC_002872 trim37 coding upstream 29330 32809620 ~ 32851847 (-)
XLOC_002873 rabgef1 coding upstream 74611 32854901 ~ 32880298 (-)
XLOC_002874 kctd7 coding upstream 101296 32881586 ~ 32890617 (-)
XLOC_002875 NA coding upstream 114707 32894997 ~ 32896944 (-)
XLOC_002876 cux1a coding upstream 118243 32898533 ~ 33156789 (-)
XLOC_002863 NA non-coding downstream 529034 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 695256 32077811 ~ 32084624 (-)
XLOC_002858 NA non-coding downstream 1484874 31262852 ~ 31295006 (-)
XLOC_002877 NA non-coding upstream 378299 33158589 ~ 33164573 (-)
XLOC_002883 dre-mir-454a non-coding upstream 596528 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 596711 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 596840 33377130 ~ 33377214 (-)

Expression



Co-expression Network