XLOC_002875


Basic Information

Item Value
gene id XLOC_002875
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32894997 ~ 32896944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006083
aattttaatATTTTGGGTCAACAATCTTTTTAAAGTTAGTTTCTGTAATTTGGTGttaaaatacagtagtaaatgtccTAAATATAAGCTTTATAGCGTCACCCGTGATGTGGCTTTAATCTTATATGAATGTGTGACGTTTTTCCACTGTCACTTTTCTGGAAGTGGACTGCAGGTTTGAAACAGCTTGACAACAAACCATCAGTAGTTTTCAGGAAATTGTGAAAATTCAGCTTTTCTTGGTTCTTCATTCTTCACATTATTTCTTAAGGCGTTCCCTGAACTCGCTGACTCCTCCAAAAGAGATTAGATAACGGAAgctgcacaatcagctaaaacgTTGGTGACATCCATTTTCGTGCGAACATAATTGGCAATACATAATGTGTCACCAAAGATTATTGATGTCACATCCATGTGTTGCGAGATAAGTCGATTTAATTATTGCGACAGGTGTACATTCTATCGAATGCTAAGGGTACTCTACTGGACTGAGATCTGTTTATCCCCACAAAATGAGCTCCGAGCTTTTGTTAGCAACAATTAGCCAGCCATAACCCTATTTTCGAACATTTTCCTCATTCTGGCATATAATCAAATGACACTGATTCTGGACAAAACACTTAACGGCTCAGATGAAGTGAACCCAgacaaataacaataacaaaccaAGGATCCTTGTGCAAAATAGTGCTGTGTTTACTATCAATTTAGATTCATTGTTTATTCAACATTATTACTTTAAATAGTTTAACAGATGAGGTAGAGCACAAACGTATAGCTATACTATAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006083 True 792 lncRNA 0.36 2 32894997 32896944

Neighbor

gene id symbol gene type direction distance location
XLOC_002874 kctd7 coding downstream 4380 32881586 ~ 32890617 (-)
XLOC_002873 rabgef1 coding downstream 14699 32854901 ~ 32880298 (-)
XLOC_002872 trim37 coding downstream 43150 32809620 ~ 32851847 (-)
XLOC_002871 NA coding downstream 114707 32779880 ~ 32780290 (-)
XLOC_002870 NA coding downstream 216752 32676810 ~ 32678245 (-)
XLOC_002876 cux1a coding upstream 1589 32898533 ~ 33156789 (-)
XLOC_002877 NA coding upstream 261645 33158589 ~ 33164573 (-)
XLOC_002878 bcl7ba coding upstream 343466 33240410 ~ 33251876 (-)
XLOC_002879 tbl2 coding upstream 357008 33253952 ~ 33265566 (-)
XLOC_002880 PRDM15 coding upstream 372427 33269371 ~ 33297864 (-)
XLOC_002867 NA non-coding downstream 303535 32584685 ~ 32591462 (-)
XLOC_002863 NA non-coding downstream 644151 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 810373 32077811 ~ 32084624 (-)
XLOC_002883 dre-mir-454a non-coding upstream 479874 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 480057 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 480186 33377130 ~ 33377214 (-)
XLOC_002890 NA non-coding upstream 766221 33663165 ~ 33664789 (-)

Expression


Co-expression Network