XLOC_002890


Basic Information

Item Value
gene id XLOC_002890
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33663165 ~ 33664789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006085
ttttaaactttaacacgATTTTGTGTTATGGGATACCCCTTGCTGTGTTGTATTTTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCTTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTTTCTAAATGTTGGATGTTTTGTAGCAGAGGTGTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGTGGCTGTTTtgtgcagttttaaaaaaaaaatgttgtggatTTGAACAAGCTAACACTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTGCTATGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCAATATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttattttaggccACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTgtaacagagtttttttttttaaattataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGGTAGgttatttaagatcatttttataaattttgaaaGTTGGTCTCATGACTCAAAGTGAAAGTGTGCATTTCAGAACCATTTACTGAcacgtgttgttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTAAAGTGCCCTCCTACCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatgtaagttttttttaaacttccaTATACATAGAAATTATACcgtaaacattacaaaataacGTTACAAAATGAATGCATTGTAAAGTAAAACATAGTATAAACACAGTtattagatttagttttttttgttaaaaaaatgttaattttggttATCtttctaaatacttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTGAGGAGtatgacaagatatttttttactgcttttGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006085 True 1625 lncRNA 0.33 1 33663165 33664789

Neighbor

gene id symbol gene type direction distance location
XLOC_002889 hunk coding downstream 41426 33614377 ~ 33621739 (-)
XLOC_002888 eva1c coding downstream 74855 33580285 ~ 33588310 (-)
XLOC_002887 si:dkey-18a10.3 coding downstream 90724 33561567 ~ 33572441 (-)
XLOC_002886 il2rga coding downstream 105866 33544329 ~ 33557299 (-)
XLOC_002885 dre-mir-130a coding downstream 285951 33377130 ~ 33377214 (-)
XLOC_002891 BX569785.1 coding upstream 211342 33876131 ~ 33880364 (-)
XLOC_002892 zar1l coding upstream 335080 33999869 ~ 34002185 (-)
XLOC_002893 rfc3 coding upstream 356579 34021368 ~ 34033680 (-)
XLOC_002894 pimr149 coding upstream 378772 34043561 ~ 34046757 (-)
XLOC_002895 BX548044.8 coding upstream 394218 34059007 ~ 34067286 (-)
XLOC_002884 dre-mir-301a non-coding downstream 286079 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 286224 33376818 ~ 33376941 (-)
XLOC_002877 NA non-coding downstream 498592 33158589 ~ 33164573 (-)
XLOC_002875 NA non-coding downstream 766221 32894997 ~ 32896944 (-)
XLOC_002900 NA non-coding upstream 531993 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 662473 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 1286271 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 1389492 35054281 ~ 35058444 (-)
XLOC_002882 ska2 coding downstream 283315 33367355 ~ 33379850 (-)

Expression


Co-expression Network