XLOC_002891 (BX569785.1)


Basic Information

Item Value
gene id XLOC_002891
gene name BX569785.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33876131 ~ 33880364 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005339
GACGTCCTGCGTGTGAGGTAAAGATGAGAGTTTACACCTTGGCAGTACTTTAAAGGCTAGTGTAATAAAATCGCACATTATAAATCATGACTGCCATGTCATAACAGATCAAGACAGCGGTCTGTCTCGCTATCAAAGAATGAAAACGAAGTAGTACCTTCTTTGATGATGGTGGGTCTTTTTCTCGGCTGGATCTTCCTGAACTTCCCTTTAAAGTCAGCCGGAGCGAACATATGCATGGAGAGACTAGCCATCTGAACCAAAACAATGCCATCTCGGCTCTGAGTCTCACAAGGATCCAGTTTGCTGTCCACCACAACTCCAGCACTACCGACATCCTTCACGGACATATCCAACAGAGAGACCACTTTCACCTGCTACCGATCAGCATGGACTCAGATCTCCATAGAAGCTCAGAGAAGTCTCTTGCTGGTCCAGGCTGTTTAGCCAGTTACAGCAGCACGTCTGAATGGGGCAGGTGTTGGATTACTCAACATGGACACGCCTCTTTgtCGATCCTTTGTAGAGCAACTGATATTGAGTCGTCTACCGACTCTTGATCTTAAGGGCACTTTGAAATTGTCTTCCATTGATTTGATTCCTCTCAACTATTGGCACAGCTTTATGCATTAGCGGTGTTGAGTTTCAAAAGGTCTTCATTAAAAAGCACTGAAAGCAGCGCACAACTGTGATTTAGAAACCGTGAAAGTAGCATGAATGTTAAATGGAAGATTTATTTTGTGTAATGTCTAAGATTTGATGGAGAAAACTAAAAAAACGATAGGATAAACCCCCAGCTTTTTCACTATAAACGTTTATTTTAAGCAACGTGAGAAATGAAGTGTTAGGCTGCCCTCTTGAGTTTAGTAGTGGTACCGTCATTTTTATGtggacaaataaaaataaaaataatttaaaccaaAATATAAAAGTTAAGGAATTTAATTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097667

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005339 True 948 lncRNA 0.41 3 33876131 33880364

Neighbor

gene id symbol gene type direction distance location
XLOC_002890 NA coding downstream 211342 33663165 ~ 33664789 (-)
XLOC_002889 hunk coding downstream 254392 33614377 ~ 33621739 (-)
XLOC_002888 eva1c coding downstream 287821 33580285 ~ 33588310 (-)
XLOC_002887 si:dkey-18a10.3 coding downstream 303690 33561567 ~ 33572441 (-)
XLOC_002886 il2rga coding downstream 318832 33544329 ~ 33557299 (-)
XLOC_002892 zar1l coding upstream 119505 33999869 ~ 34002185 (-)
XLOC_002893 rfc3 coding upstream 141004 34021368 ~ 34033680 (-)
XLOC_002894 pimr149 coding upstream 163197 34043561 ~ 34046757 (-)
XLOC_002895 BX548044.8 coding upstream 178643 34059007 ~ 34067286 (-)
XLOC_002896 pimr144 coding upstream 206227 34086591 ~ 34107919 (-)
XLOC_002885 dre-mir-130a non-coding downstream 498917 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 499045 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 499190 33376818 ~ 33376941 (-)
XLOC_002877 NA non-coding downstream 711558 33158589 ~ 33164573 (-)
XLOC_002900 NA non-coding upstream 316418 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 446898 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 1070696 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 1173917 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 1279646 35160010 ~ 35164291 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16347460_16350144 NA coding CI01000304 null 16346776 ~ 16350185 (+)