XLOC_002887 (si:dkey-18a10.3)


Basic Information

Item Value
gene id XLOC_002887
gene name si:dkey-18a10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33561567 ~ 33572441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005333
ACAGTCGGCGAATCTGGAGCAGTGTGACGAACATTGATCttcaaacaacacacacaaagtTTCTTCATCTAgatctttatatttaaaaaaagatgaaaaacgtCCCAGCGTTTGTCAGCAAACTTTGGACACTTGTAGAGGCTCAGGCAACGAATCACCTGATCTGCTGGAGTCAAGATGGCTGTAGCTTTCTTGTCCAAGATGAGCAGCGGTTCAGCAAAGAAGTACTGCCCTTATACTTTAAACACAGCAACATGACCAGCTTTGTGCGCCAACTCAACATGTATGGCTTCCACAAAGTGTTGCACGTAGACTCCGGCTTGCCTAAAGCTGAAAGTCAAATTAACTGCGTTGAGTTTCAGCACGAGGACTTCCAGAGAGATCAGCCTCATCTGCTGGGCCTCATCCGCAGGAAGGTTTCTGTTAGCCGTGGGGCTGAAGAGGGAGGGCAAATGTCTCAGGTAATCGTTCAGGTTAGACATTTCAGAGGCTGTCAAGACTCCTCAGACCTCAAACTCACGGCTTTGTGCAGGGATAACGAGAGCTTATGGAGAGAACTGGACACATTAAGACAGAACTACCAGCAGCAGCACAAAATCATACGCAAGattataaaATTCATCATCAACAGCGTACAACTGAATGGGATCAAAGGTTGCAAACGGAGACTCCCCATGATCGACAATTCTGGAGAATTTCACTCTGCACCTAAATATGCGCGTTCGTTTGGTGTGAACTCCACCCTGACAACTTCATGCCTTCAAGAGAACCCCTCGCTGCAAGAGCTGGATGTGTCATCCGCTGACGTGTACTCCAATGGCATGATCATCTCTGACATCACAGACCTGCTGGATCCCACACCTGAGCTGAACAGAGGTTGCATGACTGAATGCCTTCCTGAAATTCTACCAACATTCTCGCCTCCCGCCTCTCCTTCTATGCCCTCCATGGACCTGGCACTGTCTTTTCTGAATGACCCAGTTGTCCTGGAGTCTGAGGAAACAGCCCAGGAAAGAAATGATGTTTGTGACCCACTGGCGCTTATTGACTCCAGTTTAGAAGCCATCCGCTCCTGCTCGCCACCGTCACCACCAGACCTGGACAATTTCAGCAAGATTCTCAGTCCTGGCTGCCACATTTCTGCTGCTAAAGTAACCGAGAGTAAGCA

Function

symbol description
si:dkey-18a10.3 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-174 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000090814

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005333 True 1168 mRNA 0.48 11 33561567 33572441

Neighbor

gene id symbol gene type direction distance location
XLOC_002886 il2rga coding downstream 4268 33544329 ~ 33557299 (-)
XLOC_002882 ska2 coding downstream 181717 33367355 ~ 33379850 (-)
XLOC_002885 dre-mir-130a coding downstream 184353 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a coding downstream 184481 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a coding downstream 184626 33376818 ~ 33376941 (-)
XLOC_002888 eva1c coding upstream 7844 33580285 ~ 33588310 (-)
XLOC_002889 hunk coding upstream 41936 33614377 ~ 33621739 (-)
XLOC_002890 NA coding upstream 90724 33663165 ~ 33664789 (-)
XLOC_002891 BX569785.1 coding upstream 303690 33876131 ~ 33880364 (-)
XLOC_002892 zar1l coding upstream 427428 33999869 ~ 34002185 (-)
XLOC_002877 NA non-coding downstream 396994 33158589 ~ 33164573 (-)
XLOC_002875 NA non-coding downstream 664623 32894997 ~ 32896944 (-)
XLOC_002900 NA non-coding upstream 624341 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 754821 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 1378619 34951060 ~ 34959178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16221131_16225319 NA coding CI01000304 null 16220734 ~ 16225319 (-)