XLOC_002869 (atg101)


Basic Information

Item Value
gene id XLOC_002869
gene name atg101
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32657496 ~ 32663759 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005312
ATCGACATTTCACAAATCAGGTAGACATGTTATATAAACGCTCTCTAGTggcttaaattacatttaattttcacCATAACATTATTTAATCCGTATTTTTATGTTGACCTCATATTCCTCCTGCAAGTTAGTCTGTTGTCGCTGTTTAGAAGCGGTGTTGACaagctgagtgtgtgtttgatacAGCTGAGCTCAGATCAGCAGAAAGGCCTTTTGTTTTCACAGCTGTTGAAGCGTATTGTTGTCATGAATTGTCGGTCAGAGGTGCTGGAGGTGTCTGTGGAAGGTCGGCAGGTGGATGAAGCCATGCTGGGCCTCCTGCACACGATCCTCCTGCACCGCAGCACGGGCAAATTTCACTACAAAAAGGAGGGCACCTACTCCATTGGCACTGTGGGCACTCAGGACGTGGACTGCGACTTCATAGACTTCACTTTCGTGCGAGTGTCTTCAGACGAGCTGGACAGGGTCATCAGGAAAGCGGTGGCCGAGTTTAAGGATGCGCTTGGCAATTCGGGCAGCGACGGCATGGGTCAGATCTCACTGGAGTTCTACCAGAAGAAGAAGTCACGCTGGCCCTTTTCAGACGAGTGCATCCCATGGGAAGTCTGGAGCATTAAGGTAAACGTGGTCAATTTGGCAAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGAGAGAAGCTCGGGGAGAAAGTCATCAACATCGTGGAGGTGATAAACCGGCACGAGTATCTCCCCAAAATGCCCACACAGTCTGAGGTAGACAACGTGTTCGATACCAGTCTGAAAGATGTCCAGCCGTACCTGTACAAGATCACGTACCAGATCACGGATTCGCTGGGCACATCAGTGAGCACCACCATGAGGAGGCTGATTAAAGACACGCTGGCCTTGTGAATAAACTCCTCCTGATTATCATCTTGTAATATAACAAAGTCACATTGCATTGCTCCTCAGTGGGATCTCGAATACATTCACTTGACTTTTCTGTATGATAATGGCATCTCTGCATCAGCTAATTGAAATATGCTTATTATTTAGTCGgatacttttgttgttgtttttataataaagttTAATTATGTTCTCAAAATTA
>TCONS_00005313
ATCAGAAGAAAAACAATGCGCATCGACATTTCACAAATCAGCTGTTGAAGCGTATTGTTGTCATGAATTGTCGGTCAGAGGTGCTGGAGGTGTCTGTGGAAGGTCGGCAGGTGGATGAAGCCATGCTGGGCCTCCTGCACACGATCCTCCTGCACCGCAGCACGGGCAAATTTCACTACAAAAAGGAGGGCACCTACTCCATTGGCACTGTGGGCACTCAGGACGTGGACTGCGACTTCATAGACTTCACTTTCGTGCGAGTGTCTTCAGACGAGCTGGACAGGGTCATCAGGAAAGCGGTGGCCGAGTTTAAGGATGCGCTTGGCAATTCGGGCAGCGACGGCATGGGTCAGATCTCACTGGAGTTCTACCAGAAGAAGAAGTCACGCTGGCCCTTTTCAGACGAGTGCATCCCATGGGAAGTCTGGAGCATTAAGGTAAACGTGGTCAATTTGGCAAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGAGAGAAGCTCGGGGAGAAAGTCATCAACATCGTGGAGGTGATAAACCGGCACGAGTATCTCCCCAAAATGCCCACACAGTCTGAGGTAGACAACGTGTTCGATACCAGTCTGAAAGATGTCCAGCCGTACCTGTACAAGATCACGTACCAGATCACGGATTCGCTGGGCACATCAGTGAGCACCACCATGAGGAGGCTGATTAAAGACACGCTGGCCTTGTGAATAAACTCCTCCTGATTATCATCTTGTAATATAACAAAGTCACATTGCATTGCTCCTCAGTGGGATCTCGAATACATTCACTTGACTTTTCTGTATGATAATGGCATCTCTGCATCAGCTAATTGAAATATGCTTATTATTTAGTCGgatacttttgttgttgtttttataataaagttTAATTATGTTCTCAAAATTA
>TCONS_00005314
GTCAATTAGtgcaaatgttgttttgaagtcatacatgcgatttcagagcaaatattcaaAGTTTTCCTCAATGTTTTActgctgtaaatataaataagttgCCTTTGCAGAGCTGAAGAGGCCTCATGTCTGTCAGGTCTGAAGCCGCTTGGAAACCCGCATTGATGAGCTTCACCTTCACCGACGGCGCCAGAGGGAGACTCGCTGTTGAAGCGTATTGTTGTCATGAATTGTCGGTCAGAGGTGCTGGAGGTGTCTGTGGAAGGTCGGCAGGTGGATGAAGCCATGCTGGGCCTCCTGCACACGATCCTCCTGCACCGCAGCACGGGCAAATTTCACTACAAAAAGGAGGGCACCTACTCCATTGGCACTGTGGGCACTCAGGACGTGGACTGCGACTTCATAGACTTCACTTTCGTGCGAGTGTCTTCAGACGAGCTGGACAGGGTCATCAGGAAAGCGGTGGCCGAGTTTAAGGATGCGCTTGGCAATTCGGGCAGCGACGGCATGGGTCAGATCTCACTGGAGTTCTACCAGAAGAAGAAGTCACGCTGGCCCTTTTCAGACGAGTGCATCCCATGGGAAGTCTGGAGCATTAAGGTAAACGTGGTCAATTTGGCAAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGAGAGAAGCTCGGGGAGAAAGTCATCAACATCGTGGAGGTGATAAACCGGCACGAGTATCTCCCCAAAATGCCCACACAGTCTGAGGTAGACAACGTGTTCGATACCAGTCTGAAAGATGTCCAGCCGTACCTGTACAAGATCACGTACCAGATCACGGATTCGCTGGGCACATCAGTGAGCACCACCATGAGGAGGCTGATTAAAGACACGCTGGCCTTGTGAATAAACTCCTCCTGATTATCATCTTGTAATATAACAAAGTCACATTGCATTGCTCCTCAGTGGGATCTCGAATACATTCACTTGACTTTTCTGTATGATAATGGCATCTCTGCATCAGCTAATTGAAATATGCTTATTATTTAGTCGgatacttttgttgttgtttttataataaagttTAATTATGTTCTCAAAATTA

Function

symbol description
atg101 Predicted to be involved in autophagosome assembly. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in phagophore assembly site. Orthologous to human ATG101 (autophagy related 101).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0000407 phagophore assembly site cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04140 Autophagy - animal
ko04136 Autophagy - other
ko04211 Longevity regulating pathway
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-051030-36 Predicted to be involved in autophagosome assembly. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in phagophore assembly site. Orthologous to human ATG101 (autophagy related 101).

Ensembl:

ensembl_id ENSDARG00000043287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005312 False 1102 mRNA 0.46 2 32657496 32660716
TCONS_00005313 False 918 mRNA 0.47 3 32657496 32660737
TCONS_00005314 True 1081 mRNA 0.47 3 32657496 32663759

Neighbor

gene id symbol gene type direction distance location
XLOC_002868 umodl1 coding downstream 17555 32613706 ~ 32639941 (-)
XLOC_002866 mogat2 coding downstream 46720 32534814 ~ 32610776 (-)
XLOC_002867 NA coding downstream 66034 32584685 ~ 32591462 (-)
XLOC_002865 dgat2 coding downstream 132725 32501961 ~ 32524771 (-)
XLOC_002864 uvrag coding downstream 162997 32264857 ~ 32494499 (-)
XLOC_002870 NA coding upstream 13051 32676810 ~ 32678245 (-)
XLOC_002871 NA coding upstream 116121 32779880 ~ 32780290 (-)
XLOC_002872 trim37 coding upstream 145861 32809620 ~ 32851847 (-)
XLOC_002873 rabgef1 coding upstream 191142 32854901 ~ 32880298 (-)
XLOC_002874 kctd7 coding upstream 217827 32881586 ~ 32890617 (-)
XLOC_002863 NA non-coding downstream 406650 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 572872 32077811 ~ 32084624 (-)
XLOC_002858 NA non-coding downstream 1362490 31262852 ~ 31295006 (-)
XLOC_002854 CT737197.1 non-coding downstream 2126239 30531143 ~ 30531257 (-)
XLOC_002875 NA non-coding upstream 231238 32894997 ~ 32896944 (-)
XLOC_002877 NA non-coding upstream 494830 33158589 ~ 33164573 (-)
XLOC_002883 dre-mir-454a non-coding upstream 713059 33376818 ~ 33376941 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15782838_15784193 ATG101, ATG101.L coding CI01000304 null 15782727 ~ 15784193 (-)
bowfin (Amia calva) AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding CM030122.1 CM030122.1 13583044 ~ 13588973 (+)