XLOC_002933 (or109-3)


Basic Information

Item Value
gene id XLOC_002933
gene name or109-3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36234985 ~ 36236610 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005417
AGCTTTGCAGaaggtagagtatccaaaatgcTTTCCTTCTATTTCTTTCAatttcttttattaatattttattattaggtaattacattatatacaaaaacaaatcattaactCAGTTGTGAATGAGAATTATGATTTTAATTTATATGTGCGTCTTACATgacactcaaggacaccttacataaaaaaacaatctcCATTATAAACAATTCACATTATAACAGCCATGACAGTAGACCTAATATAAACAACCATATAAAttactaaaatgactaaaaatggATGTTAAGGGGAGATTTTAAAAGAATAGGTTTAATAGTGTTTTGAATGTTGTCTGTGATTGAGTTTACTTTTTCAGTTCTTCATTACAGGTGACAAAAAAACCCAGAGCAGCAGGTGTCATGAGCTCCATACAGTCAAACTCTTCTGCAAACGAGACCTTTGTTCGTCCTGCAAAATTTTTTCTTAGTGGCCTTTCTAATGTTCCACATGTAAAATACTATTATGTGTTCTTGTCTTTGGTGTATGTTGTTACTGTTTTGGGAAATTCATTTCTCATGTGTACTATTTATTTAGCCCGGAGACTTCACACAGCcaaatatattgttgttttcCATCTTGCCTTTTCTGATCTGTGTGGAAGCTCGGCTGTGATTCCCAAAACCATTGATACGTTTTTATTTGACCACCAGGATATTTCATATGAAGCATGTTTGGCAAACACGTTTTTTATATATCATTTCCTAAATATCCAGTCTTTAACACTACTTGTCATGGCTTATGACAGACTGGTTGCTATTTGTTTTCCTCTACATTATCATGCCATTATAACTAAAGCAGCAATGTTCCTCATCCTAGGAGGAATGTGGATTTTTTCTGTGACACATATTTCAGTATTTGTAGGTTTGCTAAATAGACTCTCCTTTTGCAGATCTACTGTGATTGATAGTTATTTTTGTGATTATAGTCTAATCAATAGACTAGCTTGTAATGATAATTctctaaatattttaatgattaaaataaattttggTCTGCTGCTTTGTGCACCACTCATATTAATCTTTGTCTCATATTTCTGCATTTCGTTAGCTTTGTTTAAGATTGCTCATGGTGCTGATCGAGTAAAAGCCATAAAAACATGCACCTCACATCTCATGTTGGTGGTAGTCGGTTATACCCCATTAATAAGTAATCAAATAGCAGTCTTAACAGCACCTATGCCTGCCAACATACGGTTAATTAACAATTGCCTGACACAGGTGATACCACCTATGCTGAATCCTATCATATACACTCTGAAGACAGATGAGGTCATGCAGTCTATTAAAGAACTGTACAATGGCCGCAATGTGAAAAATATAGGACAGATGAAATGTACAAGGAGATATTCAAAACAGAAATGACTTGTTTAAATGTGACATTTCAACAAACATCTAAATGTTGATGGATTTTTTATGTTATAtcagaaatgtattttaacaggctaaatatgttttaaacaacTGAGCTCAAACCTAGCCAACACggtatagtttttaaataaagctaAGATTTATCTTTGGGAAATAAAGTCAtatgaaataacattttaatcacatttactttaaataaaacaaatggttC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-69 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000100272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005417 True 1626 mRNA 0.32 1 36234985 36236610

Neighbor

gene id symbol gene type direction distance location
XLOC_002932 or109-4 coding downstream 3244 36230602 ~ 36231741 (-)
XLOC_002931 or109-5 coding downstream 9256 36224470 ~ 36225729 (-)
XLOC_002930 or109-6 coding downstream 11980 36221505 ~ 36223005 (-)
XLOC_002929 or109-7 coding downstream 14924 36217239 ~ 36220061 (-)
XLOC_002928 or109-11 coding downstream 20403 36212575 ~ 36214582 (-)
XLOC_002934 or109-2 coding upstream 1371 36237981 ~ 36240806 (-)
XLOC_002935 or109-1 coding upstream 6281 36242891 ~ 36244864 (-)
XLOC_002936 or110-2 coding upstream 15377 36251987 ~ 36254445 (-)
XLOC_002937 or110-1 coding upstream 22438 36259048 ~ 36260490 (-)
XLOC_002938 ubl3a coding upstream 126708 36363318 ~ 36406562 (-)
XLOC_002926 BX088524.4 non-coding downstream 71691 36163179 ~ 36163294 (-)
XLOC_002925 NA non-coding downstream 141452 35811752 ~ 36093533 (-)
XLOC_002923 NA non-coding downstream 580305 35650584 ~ 35654680 (-)
XLOC_002922 BX663516.3 non-coding downstream 614536 35620333 ~ 35620449 (-)
XLOC_002919 NA non-coding downstream 803330 35429504 ~ 35431655 (-)
XLOC_002939 NA non-coding upstream 228733 36465343 ~ 36469895 (-)
XLOC_002942 NA non-coding upstream 358770 36595380 ~ 36610901 (-)
XLOC_002944 NA non-coding upstream 405556 36642166 ~ 36650904 (-)
XLOC_002945 AL845435.1 non-coding upstream 417587 36654197 ~ 36662611 (-)
XLOC_002955 BX323076.2 non-coding upstream 804468 37041078 ~ 37042232 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17369357_17411120 NA coding CI01000304 null 17369154 ~ 17411203 (-)