XLOC_002941 (slc1a3b)


Basic Information

Item Value
gene id XLOC_002941
gene name slc1a3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36558804 ~ 36592486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005428
ACAGCATGACCAAAAGCACAGGGGAGAAACCGCGGTCGCGCAGCCGCGTCCAGCAGTTCCGGGAGGGAATCCAGCTGCGCTCCCTAAAGGCCCGGAAGAAAGTTGAGGACATCAGTAAAGATGACGTGAAGGGCTTTCTGAGGAGAAATGCCTTTGTGCTCTTTACCATTGGAGCGGTGGTGTTTGgaATTACGCTGGGATTTGCTCTGAGGTCTTACAAGATGTCATACAGAGAAGTGAAGTATTTCTCCTTTCCTGGTGAGCTGTTGATGCGGATGCTGCAGATGCTTGTGCTTCCTCTTCTAGTCTCAAGTTTGATAACAGGCATGGCAGCGCTGGACAGCCGAGCTTCTGGGAAGATGGGCATGCGTGCGGTCATTTACTACATGACCACCACCTTCATCGCAGTGTTCATTGGCATCATCATGGTCCTGATCATCCACCCAGGCAAAGGCTCAAAAGATGAGTTCACCAAACAGCAGAAGATCGAGCAGGTCAGCCCGGCCGATGCCTTCCTGGACCTCATCAGaaacatgtttccTCCTAATCTGGTTCAAGCCTGCACTCAACAGTTTAAGACTCAGTATGGCAAGAGGATCATCCACGTGAAGATGATTGTGAACGATTCGATCTTCAACTTGACGAACGCTACGCAGGAGATCGCTCAGGAGGAGGTGATTCCTCTGTCGGGCACCACCAACGGCGTCAACGCTCTCGGCCTGGTGGTGTTTTCAATGTGTTTCGGCCTGATAATCGGGAACATGAAGGAACAGGGACAGGCTCTCCGAGATTTCTTCGACTCCCTCAATGAGGCCATCATGCGACTTGTTGCTATTATTATGTGGTACGCACCTATTGGTATCCTCTTCCTGATTGCTGGTAAAATCGTGGAGATGGATGACATCACAGCGATGGGCGGTCAGCTGGGCATGTATACGGTTACGGTGATCATCGGCCTCATGATACACGGCATAATCATTCTGCCCACTTTATACTTCGTCATCACTCGCAAAAACCCCTTCATCTTCATCACGGGTTTGCTGCAGGCTCTCATCACAGCTCTCGGCACCTCGTCCAGCTCTGCCACTCTTCCCATTACCTTTAAATGCCTGGAGGAGAATAATAAAGTGGACAAACGCGTGACTCGATTTGTTCTTCCTGTTGGAGCCACCATCAACATGGACGGAACAGCTCTGTATGAAGCCCTGGCAGCCATCTTTATCGCCCAGGTGAACAACATGGAAATGAACTTCGGGCAGATCATAACTATTAGCATCACGGCCACTGCTGCAAGTATCGGAGCGGCTGGAATTCCACAGGCTGGTCTGGTCACCATGGTGATTGTGCTGACTTCAGTTGGACTCCCAACCGATGACATCACCCTAATCATTGCAGTTGATTGGTTCCTggATCGACTGCGCACAACAACTAATGTGCTGGGAGATTCAATAGGAGCTGGAATCATCGAGTTCCTGTCCAAAGATGAGCTCCAGGGCGGGGATGTGGAGCTGGGCAGCTCAGTGCTGGAGGAGAACGAGCTGAAGAAACCCTACCAGAAGATCCCTCAGGAGAACGAATACGAGAACGAGAAACCTCCAGACAGCGAGACCAAGATGTAGAGGCTGATGTT
>TCONS_00005429
GATCACTCAGGGCATCTCTCAGCACAAGAGCTCACTGCAAGCAGTGTAGGGTCTCTTTTGGGTCACCGGTTCAGCCCAGCCAGCTTGATCTCAGTGTGTGGAGCGACAGCATGACCAAAAGCACAGGGGAGAAACCGCGGTCGCGCAGCCGCGTCCAGCAGTTCCGGGAGGGAATCCAGCTGCGCTCCCTAAAGGCCCGGAAGAAAGTTGAGGACATCAGTAAAGATGACGTGAAGGGCTTTCTGAGGAGAAATGCCTTTGTGCTCTTTACCATTGGAGCGGTGGTGTTTGgaATTACGCTGGGATTTGCTCTGAGGTCTTACAAGATGTCATACAGAGAAGTGAAGTATTTCTCCTTTCCTGGTGAGCTGTTGATGCGGATGCTGCAGATGCTTGTGCTTCCTCTTCTAGTCTCAAGTTTGATAACAGGCATGGCAGCGCTGGACAGCCGAGCTTCTGGGAAGATGGGCATGCGTGCGGTCATTTACTACATGACCACCACCTTCATCGCAGTGTTCATTGGCATCATCATGGTCCTGATCATCCACCCAGGCAAAGGCTCAAAAGATGAGTTCACCAAACAGCAGAAGATCGAGCAGGTCAGCCCGGCCGATGCCTTCCTGGACCTCATCAGaaacatgtttccTCCTAATCTGGTTCAAGCCTGCACTCAACAGTTTAAGACTCAGTATGGCAAGAGGATCATCCACGTGAAGATGATTGTGAACGATTCGATCTTCAACTTGACGAACGCTACGCAGGAGATCGCTCAGGAGGAGGTGATTCCTCTGTCGGGCACCACCAACGGCGTCAACGCTCTCGGCCTGGTGGTGTTTTCAATGTGTTTCGGCCTGATAATCGGGAACATGAAGGAACAGGGACAGGCTCTCCGAGATTTCTTCGACTCCCTCAATGAGGCCATCATGCGACTTGTTGCTATTATTATGTGGTACGCACCTATTGGTATCCTCTTCCTGATTGCTGGTAAAATCGTGGAGATGGATGACATCACAGCGATGGGCGGTCAGCTGGGCATGTATACGGTTACGGTGATCATCGGCCTCATGATACACGGCATAATCATTCTGCCCACTTTATACTTCGTCATCACTCGCAAAAACCCCTTCATCTTCATCACGGGTTTGCTGCAGGCTCTCATCACAGCTCTCGGCACCTCGTCCAGCTCTGCCACTCTTCCCATTACCTTTAAATGCCTGGAGGAGAATAATAAAGTGGACAAACGCGTGACTCGATTTGTTCTTCCTGTTGGAGCCACCATCAACATGGACGGAACAGCTCTGTATGAAGCCCTGGCAGCCATCTTTATCGCCCAGGTGAACAACATGGAAATGAACTTCGGGCAGATCATAACTATTAGCATCACGGCCACTGCTGCAAGTATCGGAGCGGCTGGAATTCCACAGGCTGGTCTGGTCACCATGGTGATTGTGCTGACTTCAGTTGGACTCCCAACCGATGACATCACCCTAATCATTGCAGTTGATTGGTTCCTggATCGACTGCGCACAACAACTAATGTGCTGGGAGATTCAATAGGAGCTGGAATCATCGAGTTCCTGTCCAAAGATGAGCTCCAGGGCGGGGATGTGGAGCTGGGCAGCTCAGTGCTGGAGGAGAACGAGCTGAAGAAACCCTACCAGAAGATCCCTCAGGAGAACGAATACGAGAACGAGAAACCTCCAGACAGCGAGACCAAGATGTAG

Function

symbol description
slc1a3b Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in episodic ataxia type 6. Orthologous to human SLC1A3 (solute carrier family 1 member 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090708-3 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in episodic ataxia type 6. Orthologous to human SLC1A3 (solute carrier family 1 member 3).

Ensembl:

ensembl_id ENSDARG00000043148

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005428 False 1630 mRNA 0.51 9 36558804 36591511
TCONS_00005429 True 1724 mRNA 0.51 10 36558815 36592486

Neighbor

gene id symbol gene type direction distance location
XLOC_002940 nipblb coding downstream 11676 36475860 ~ 36547128 (-)
XLOC_002939 NA coding downstream 88909 36465343 ~ 36469895 (-)
XLOC_002938 ubl3a coding downstream 152242 36363318 ~ 36406562 (-)
XLOC_002937 or110-1 coding downstream 298314 36259048 ~ 36260490 (-)
XLOC_002936 or110-2 coding downstream 304359 36251987 ~ 36254445 (-)
XLOC_002942 NA coding upstream 2894 36595380 ~ 36610901 (-)
XLOC_002943 rsf1b.1 coding upstream 20518 36613004 ~ 36633926 (-)
XLOC_002944 NA coding upstream 49680 36642166 ~ 36650904 (-)
XLOC_002945 AL845435.1 coding upstream 61711 36654197 ~ 36662611 (-)
XLOC_002946 dnajb13 coding upstream 80901 36673387 ~ 36682522 (-)
XLOC_002926 BX088524.4 non-coding downstream 395510 36163179 ~ 36163294 (-)
XLOC_002925 NA non-coding downstream 465271 35811752 ~ 36093533 (-)
XLOC_002923 NA non-coding downstream 904124 35650584 ~ 35654680 (-)
XLOC_002922 BX663516.3 non-coding downstream 938355 35620333 ~ 35620449 (-)
XLOC_002955 BX323076.2 non-coding upstream 448592 37041078 ~ 37042232 (-)
XLOC_002957 CT573231.1 non-coding upstream 759994 37352480 ~ 37357303 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17652862_17661953 SLC1A3A, SLC1A3B, SLC1A3 coding CI01000304 null 17651127 ~ 17662252 (-)