G1062459 (ints2)


Basic Information

Item Value
gene id G1062459
gene name ints2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33399896 ~ 33404496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1210267
CCAGCAGTGCGTTCTTCAGCTCCTCTCGGGTGACCTCTGGGGTGTCTGGCTGTCCAGCCTGTCCCAGGCCCAGGTTAGAGATGGTCTGGCTCTGCCGGTCAAAGTCCGCTGTTTCCTTCAGGTGGGAGTTGAGGTAGGCCTTGGAGGCCAGGAGGTAGCCATTCAGCATGTGGAGAACAATGTCCATCAGAGGGGGACACCTGTAGACCCTTTGGTCACAGCGCAGCACGATGAGGGGGTCAACCATCAGGTCATTCTGAATATACCTCTGCTGCCTCAGCATCTTCACTGAGGGCTGCAGGGCATTCACCGTCATCACCCACAGCCTGCGGGGCATGACAGTGTTGAGGACCATCCAGAGTTTGTTGAGGGTCTGGGGGATACGTCGGGGGACACTGGGGCCCAGTAGCAGCCCCATGCTACCCGTCAGAGCCTCGGCGTAGGGGATCAGGTCTCCAGCTGACAGCAGGGTCAGGTGGTCCAGCATCCTCATAAGTCTGGGACCACTGGAAGGAACCTTCTGGaaggCGTCATGGAGTTGTGTCTGGGAGTATCTGCAGGTGTTAGAGGTGAGCAGCATCCTCCGGAGCAGAGGCAGGGTTCCTGTCACCTCCTCCTCACACACCCAGTCCTCAACCATACACAGGTGGGGGTAGTTAGTGGCCAGCAGCCGCAGCAAGGCCGAGTGGAGgcctggggagggggaggaaaggagaggagtcaAAAGACATGACACTAAAACAAGCAAAGGAAAAGAACGCTGACCCTAAAGAAGGCTAATACACTGAAATAAGTTATACACACAGTGTTACAAATTAGCAGGTAAGAATGGCTTGCATTAGGTTGATGGTAGCCTACACTAAACACTGGCTACCAGGCAAATAGGTGCCTAAATAAACTTGCTGGAGCACCAAAAGAGAAAGTGTAGTAGGTTAATCAGTAGGC

Function

symbol description
ints2 Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS2 (integrator complex subunit 2).

NR:

description
integrator complex subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1210267 True 945 lncRNA 0.55 4 33399896 33404496

Neighbor

gene id symbol gene type direction distance location
cxadr LOC106567957 coding upstream 784906 32555056 ~ 32614990 (+)
btg3 btg3 coding upstream 845240 32546918 ~ 32554656 (+)
LOC110537469 LOC106567749 coding upstream 865210 32504245 ~ 32534686 (+)
LOC110537467 LOC106567956 coding upstream 928525 32458471 ~ 32471371 (+)
prdm15 LOC106567952 coding upstream 945083 32438318 ~ 32454813 (+)
LOC110537474 NA coding downstream 97438 33501934 ~ 33513654 (+)
rnft1 LOC106567963 coding downstream 194443 33598939 ~ 33624023 (+)
ptrh2 ptrh2 coding downstream 378318 33782814 ~ 33784617 (+)
LOC110537484 LOC106567971 coding downstream 468519 33873015 ~ 33880271 (+)
abr LOC106567975 coding downstream 730012 34134508 ~ 34360009 (+)
G1062404 NA non-coding upstream 35735 33359734 ~ 33366249 (+)
G1062401 NA non-coding upstream 42838 33355522 ~ 33357058 (+)
G1062343 NA non-coding upstream 66656 33332981 ~ 33333240 (+)
G1062265 NA non-coding upstream 152538 33247153 ~ 33247358 (+)
G1062244 NA non-coding upstream 165041 33234469 ~ 33234855 (+)
G1062500 NA non-coding downstream 51535 33456031 ~ 33459797 (+)
G1062512 NA non-coding downstream 74942 33479438 ~ 33479661 (+)
G1062513 NA non-coding downstream 75253 33479749 ~ 33479994 (+)
G1062515 NA non-coding downstream 78995 33483491 ~ 33483757 (+)
G1062516 NA non-coding downstream 79340 33483836 ~ 33484161 (+)
G1060470 NA other upstream 1588549 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 2190539 31207629 ~ 31209357 (+)
G1059091 NA other upstream 2392830 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 2520785 30848508 ~ 30879117 (+)
G1062537 NA other downstream 103823 33508319 ~ 33508863 (+)
G1062648 NA other downstream 253782 33658278 ~ 33661949 (+)
ubb ubb other downstream 1362528 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 1571796 34964222 ~ 34982028 (+)
LOC110524522 LOC106605670 other downstream 2066004 35468060 ~ 35471779 (+)

Expression


Co-expression Network