G1062633 (LOC107662719)


Basic Information

Item Value
gene id G1062633
gene name LOC107662719
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33561250 ~ 33561701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1210478
tcatagtttgcgataacgttgtttttcaccactctgcagctgtcacagattggtttgcagcacatcacagatttatggttttgtacctgcctgcatattcacccttcctcaacccaatagaggagtttttctctgcctggaggtggaaagtgtttggtcaccacccacatgaccaaatgtctcttttggaagccatgcgtgccggatgtgaggacacaagtccagaggactgccagggatggataaggcactccagaaggttcttccccaggtgcatggcaagagaaaacattagatgtgatgttgaagaaaacctgtggcctgatgctagagagaggcaggattagcccctcaattatttgttcgaattacagtatgtacttttagtttctaccttttttttctcattactgtaattccgtaaattactacagactattgaagcaaactgc

Function

NR:

description
PREDICTED: insertion element IS630 uncharacterized 39 kDa protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1210478 True 452 lncRNA 0.44 1 33561250 33561701

Neighbor

gene id symbol gene type direction distance location
LOC110537474 NA coding upstream 47596 33501934 ~ 33513654 (+)
cxadr LOC106567957 coding upstream 946260 32555056 ~ 32614990 (+)
btg3 btg3 coding upstream 1006594 32546918 ~ 32554656 (+)
LOC110537469 LOC106567749 coding upstream 1026564 32504245 ~ 32534686 (+)
LOC110537467 LOC106567956 coding upstream 1089879 32458471 ~ 32471371 (+)
rnft1 LOC106567963 coding downstream 37238 33598939 ~ 33624023 (+)
ptrh2 ptrh2 coding downstream 221113 33782814 ~ 33784617 (+)
LOC110537484 LOC106567971 coding downstream 311314 33873015 ~ 33880271 (+)
abr LOC106567975 coding downstream 572807 34134508 ~ 34360009 (+)
LOC110537489 LOC106567978 coding downstream 852687 34414388 ~ 34547258 (+)
G1062615 NA non-coding upstream 26444 33534544 ~ 33534806 (+)
G1062538 NA non-coding upstream 51157 33509865 ~ 33510093 (+)
G1062525 NA non-coding upstream 66940 33494023 ~ 33494310 (+)
G1062524 NA non-coding upstream 68272 33492632 ~ 33492978 (+)
G1062636 NA non-coding downstream 6478 33568179 ~ 33568403 (+)
G1062647 NA non-coding downstream 11849 33573550 ~ 33657966 (+)
G1062705 NA non-coding downstream 112698 33674399 ~ 33674951 (+)
G1062706 NA non-coding downstream 113268 33674969 ~ 33676341 (+)
G1062708 NA non-coding downstream 125352 33687053 ~ 33687384 (+)
G1062537 NA other upstream 52387 33508319 ~ 33508863 (+)
G1062404 NA other upstream 195001 33359734 ~ 33366249 (+)
G1060470 NA other upstream 1749903 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 2351893 31207629 ~ 31209357 (+)
G1059091 NA other upstream 2554184 31000227 ~ 31007066 (+)
G1062648 NA other downstream 96577 33658278 ~ 33661949 (+)
ubb ubb other downstream 1205323 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 1414591 34964222 ~ 34982028 (+)
LOC110524522 LOC106605670 other downstream 1908799 35468060 ~ 35471779 (+)
G1064849 NA other downstream 1926037 35487738 ~ 35488944 (+)

Expression


Co-expression Network