G1093874


Basic Information

Item Value
gene id G1093874
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59211790 ~ 59212987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1244054
tcttcaaagttgccacccttgccttgatgacagctttgcccactcttggcattatctcaaccagctttatgaggttgtcacctggaatgtatttgaattaacaggtgtgccttgttaaaagttcatttatggaatttctttccttcttaatgcattgagccaatcagttgtgttgtgagaaggtagggatggtatacagaagatagccctatttagtaaaagaccaagaccatattatggcaagaatagctcaaataaccaaggagaaatgacagtccattgttactttaagacatgatggtcagtcaaaacctggaacatttcaagaacttcgaatgtttcttcaagtgcagtcgcaaaaaccatcaagagctatgatgaaactgtctctcacgagaccgccacaggaagttacctgaggataagtacattatagttaccagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaacagacacatcaacatcaactgttcagagacgattgcgtgaatcaggccttcatggtcgaattgctgcaaagaaaccactactgaaggacaccattaagaataAGAGACCTGCTTTGGCAAAGAAAccggagcaatggacattagactggtggaaatctgccctttgatctgatgagttcaaatttgtgatttttggatccaactgtcgtatctttgtgagatgcagagtcaGTGGACCGATAATAGTcacatatgtggttcccaccgtgaagcatggcggaggaggtgtgatggtgctttgctggtgacactgtcagtgatatatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcaatacgccatcccatctggtttgtacttagtgggacaatcatttgtttttcaatgggacaatgacccaacacacctccaggctgtgtacgggctatttTACCAcaaatgagagtgatggagttctgcataagatgacttggcctccacaatcatccgaacCTGAACCCAATTGAGacgatttgggatgagttggaccacagagtgaaggaaaagcagccaacatgtgctcagcatatgtgggaacttgtTCAAGGCTCTTGGataaacattccaggtgaagatggcAGAAAGAAtgccagagtgtgcaaagctgtcaaggcaaagggtggcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1244054 True 1198 lncRNA 0.43 1 59211790 59212987

Neighbor

gene id symbol gene type direction distance location
LOC110537871 LOC106604470 coding upstream 105784 59052329 ~ 59106006 (+)
LOC110537870 LOC100380866 coding upstream 236654 58961767 ~ 58975136 (+)
LOC110537868 LOC106600641 coding upstream 252556 58935530 ~ 58959234 (+)
LOC110537867 LOC106600640 coding upstream 294381 58875401 ~ 58917409 (+)
LOC110538920 NA coding upstream 338339 58850736 ~ 58873451 (+)
sez6l2 sez6l2 coding downstream 20367 59233354 ~ 59343106 (+)
kctd13 LOC106600645 coding downstream 137792 59350779 ~ 59389927 (+)
hirip3 hirip3 coding downstream 185748 59398735 ~ 59422218 (+)
antkmt fam173a coding downstream 209849 59422836 ~ 59436071 (+)
xpo6 LOC106600647 coding downstream 227244 59440231 ~ 59502350 (+)
G1093823 NA non-coding upstream 68279 59143278 ~ 59143511 (+)
G1093820 NA non-coding upstream 79314 59132186 ~ 59132476 (+)
G1093810 NA non-coding upstream 92861 59118722 ~ 59118929 (+)
G1093719 NA non-coding upstream 224586 58986447 ~ 58987204 (+)
G1093715 NA non-coding upstream 228876 58982635 ~ 58982914 (+)
G1093974 NA non-coding downstream 290429 59503416 ~ 59503617 (+)
G1093979 NA non-coding downstream 303054 59516041 ~ 59516951 (+)
G1094003 NA non-coding downstream 364393 59577380 ~ 59577673 (+)
G1094009 NA non-coding downstream 373479 59586466 ~ 59587553 (+)
G1094010 amdhd2 non-coding downstream 378724 59591711 ~ 59593406 (+)
LOC118937686 NA other upstream 989600 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1296958 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2093863 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2458843 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2485787 56725607 ~ 56726003 (+)
G1093909 NA other downstream 328571 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 818016 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1172677 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1483700 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1603504 60816491 ~ 60818897 (+)

Expression


Co-expression Network