G1094010 (amdhd2)


Basic Information

Item Value
gene id G1094010
gene name amdhd2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59591711 ~ 59593406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1244194
AGAAACAGTGATTCCCCTCTGAGCCAGCTCTCTAACCACCTTCTCACTGTTGGGTAGCTCGGGGGCCAACGTCACCATGGCAACGTTATCAAGGGTCCCGTAGGTCTCAATCAGGTCCAACATGCCGCCCGACTGGAAGGAGCGCAGGTACTGCTCCGGGTGGGCTCCCTTCTTCTCTAAACTGATGAATGGACCTTCTAGATGACAGcCCAGAACTCCagctccctccactcctccactgtGAACTTTAACCTCAGACAAGACCTTGTGGTAGATGTTTGGAGGGGaggtgactagggtgggtaaaaAAGAGGTGACACCATGCTCCAAGATTTTCTTGGCTACTAGGGCCACACCTCCTCTGACATTACTGGTTGCTTGCGAGAAGTCAAT

Function

symbol description
amdhd2 Predicted to enable N-acetylglucosamine-6-phosphate deacetylase activity. Predicted to be involved in N-acetylglucosamine catabolic process. Predicted to act upstream of or within N-acetylglucosamine metabolic process and carbohydrate metabolic process. Is expressed in blood vessel; immature eye; neural crest; retina; and yolk syncytial layer. Orthologous to human AMDHD2 (amidohydrolase domain containing 2).

NR:

description
N-acetylglucosamine-6-phosphate deacetylase isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1244194 True 393 lncRNA 0.53 3 59591711 59593406

Neighbor

gene id symbol gene type direction distance location
ccdc137 ccdc137 coding upstream 33232 59546119 ~ 59558479 (+)
nme4 LOC100301668 coding upstream 52338 59508568 ~ 59539373 (+)
xpo6 LOC106600647 coding upstream 89361 59440231 ~ 59502350 (+)
antkmt fam173a coding upstream 155640 59422836 ~ 59436071 (+)
hirip3 hirip3 coding upstream 169493 59398735 ~ 59422218 (+)
LOC118937690 NA coding downstream 3208 59596614 ~ 59598278 (+)
LOC110537890 NA coding downstream 5965 59599371 ~ 59611523 (+)
LOC110537886 LOC106600678 coding downstream 78811 59672217 ~ 59673882 (+)
atp6v0ca vatl coding downstream 95263 59688669 ~ 59702156 (+)
LOC110537889 LOC106561172 coding downstream 112539 59705945 ~ 59708325 (+)
G1094009 NA non-coding upstream 4158 59586466 ~ 59587553 (+)
G1094003 NA non-coding upstream 14038 59577380 ~ 59577673 (+)
G1093979 NA non-coding upstream 74760 59516041 ~ 59516951 (+)
G1093974 NA non-coding upstream 88094 59503416 ~ 59503617 (+)
G1093874 NA non-coding upstream 378724 59211790 ~ 59212987 (+)
G1094084 NA non-coding downstream 92356 59685762 ~ 59686067 (+)
LOC110537883 LOC106600674 non-coding downstream 131508 59710093 ~ 59726547 (+)
G1094095 NA non-coding downstream 141536 59734942 ~ 59735397 (+)
G1094098 NA non-coding downstream 157998 59751404 ~ 59751776 (+)
G1093909 NA other upstream 49108 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 1369521 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1676879 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2473784 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2838764 56752418 ~ 56752947 (+)
G1094218 LOC100380853 other downstream 437597 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 792258 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1103281 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1223085 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 1361294 60931123 ~ 60965921 (+)

Expression


Co-expression Network