LOC110537890


Basic Information

Item Value
gene id LOC110537890
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59599371 ~ 59611523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475687.2
ctcccggtcgcggccggctgcgacagagcctgggctcgaacccagaatctctggtggcacagctagcactgcgccacccaggaggcccagaCAAAGGCTTCTTGATCCAGAGCTTGACACATGCAGGAATTACTGTGAACATTCCTCCATTCCTGAACCACAAAGGTTCATAGAGCGTGAGATGCATCTCACAAAAGACATAGCGAGAAATGGGATCCATGTTGATAGGGCAAATGCTTGACTATAAGATGTAAAAATCCTGAAATTCATCCCACCTTGTCTGCGTTATAGTAATGTGCTGGTGCAGACTTGCTGTGCACTTGTTAACCTCCAAGGCACACTCATCAGAGAAGTAGCTGTTGGTTGGGAAACGAGAACAACGAGGCATGAGGGTTTGGTGTTAAGGGACGAGTTGTCACATTGTCGAAGGAGTGCCTCCCTCAGACCATCCTGTGCATGGACATCCTGTGCCAGTGTGATGTGGTTGTGGAGACTACAGCACATCAAGCCTGTGGACGAACAATTCAGTAACTCATCAAATATGATACAATATTGTGTAAAACATTGAATTTGTAGATGTCTCAGTTTTGCCTGTCCCCTTTTccacatgttttatacatgaGACGTGACATGCGGAACATAAGGCTCACCCCACGAGAAGTATGATCAATGCCACCCTCAGCAAGGAGAAGTGATGTCTCTCCCATCCTGCATTTAGCAGAAACTGAAGCTCCACAAAACAAAGGGGAAAACAGCTACTGACAGGTGGTGCGAAGAAGACGCTGATCCagtgcccccccaaaaaacattggaATAAAACTTCAAGAAATGAGGTGTTGCTTGCGGAACATCCTGCTCATCCCATGAGAAGCAGAGCATGATCAATGCCACTTGCAGCAAGGAGATCTTCTGGAATGGATGTACTCTCACTCTGGGGggaccaaccaggaaCAACCCTAATTAGCTTCAgtggcaagccagcagtgggatgcagggtggtatgctgctggcccattgaagaggagtgggacaacattccacaggccacaatcaacagcctgatcaactctgtgcGAAGATGTCGAGCTGCATGCTGCAAATGGTGGtatcaccagatactgactggttttcttatccacacccctactttttttaaagtatatgtgaccaacagatccatatctatattcccagtcatgtgaaatctataaattagggcctaatgaatgtatttaaatggactgatttccttatatgaactgtaactcagtaaaagcaTGAATTGTGTTTATGTTGCACTTAtatttacaattggctcattcatcccccctcctctcccctgtaactattccccagctcgttgctgcaaatgagaacgtgttctcagtcaacttacctggtaaaataacggataaataaataaaaaaaattctgtCCAGTGTCGTAGAATTACAACATTATGTTAATCACATTACTTTTATATTAGAATGTATCCCTATATTAGTACATTCCCACTGTCATATCTAATAGGCAACATAATAGTGTTCTTAGAACTGTGTCTGTGAATTGAGAGGAGCCGCTGAGATTTTAACACTGACAGTAGATTTACGATGGCTTGGTGTCTGTGTACCTGTTTGTCTGTGCCAGGGACATCAAATCTCCTTTTCCTCTCCCATATGGCAGATGAATGCTGAACTTAATCGTTTGAGGGAATGACCTGCTGTCTATGTTACATTAGTACTTCTGTATAAACAAGCAGTAAATGACCAAGAGACAGAAACTTGTTGCTATGTAATCTTGATGTCTGTTGCATGAGAGCACAATGTACCTTTGTATAAATTCTCTCATCTGTGATGGACTTTACTATAAAATGTGTTGCATTAGTCCcgctggttgagttctcagtcATCACCTCCAGGGTGGTTATCAAACccccttttcttttcttttcttacAGTGGGATGCCGGAGGGTAGTGCGTTGAACTTGTGAAGGGGGTGGGCACAGTCAAACTGGATGgatgtctttgtctctgtgtctcgctTCATCAATTAAAACAGTCACCAATCAATTTCATTAATtcg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475687.2 True 2083 mRNA 0.44 5 59599371 59611523

Neighbor

gene id symbol gene type direction distance location
LOC118937690 NA coding upstream 1093 59596614 ~ 59598278 (+)
ccdc137 ccdc137 coding upstream 40892 59546119 ~ 59558479 (+)
nme4 LOC100301668 coding upstream 59998 59508568 ~ 59539373 (+)
xpo6 LOC106600647 coding upstream 97021 59440231 ~ 59502350 (+)
antkmt fam173a coding upstream 163300 59422836 ~ 59436071 (+)
LOC110537886 LOC106600678 coding downstream 60694 59672217 ~ 59673882 (+)
atp6v0ca vatl coding downstream 77146 59688669 ~ 59702156 (+)
LOC110537889 LOC106561172 coding downstream 94422 59705945 ~ 59708325 (+)
LOC110537883 LOC106600674 coding downstream 98570 59710093 ~ 59726547 (+)
mrps34 mrps34 coding downstream 129643 59741166 ~ 59751234 (+)
G1094010 amdhd2 non-coding upstream 5965 59591711 ~ 59593406 (+)
G1094009 NA non-coding upstream 11818 59586466 ~ 59587553 (+)
G1094003 NA non-coding upstream 21698 59577380 ~ 59577673 (+)
G1093979 NA non-coding upstream 82420 59516041 ~ 59516951 (+)
G1093974 NA non-coding upstream 95754 59503416 ~ 59503617 (+)
G1094084 NA non-coding downstream 74239 59685762 ~ 59686067 (+)
G1094095 NA non-coding downstream 123419 59734942 ~ 59735397 (+)
G1094098 NA non-coding downstream 139881 59751404 ~ 59751776 (+)
G1093909 NA other upstream 56768 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 1377181 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1684539 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2481444 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2846424 56752418 ~ 56752947 (+)
G1094218 LOC100380853 other downstream 419480 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 774141 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1085164 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1204968 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 1343177 60931123 ~ 60965921 (+)

Expression


Co-expression Network