mrps34 (mrps34)


Basic Information

Item Value
gene id mrps34
gene name mrps34
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59741166 ~ 59751234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624339.2
AGCGGAACGGTTTCTATCCCGGAACTAAAGTAATGCATCAATAATTCTAGGGAGGAATTTTGTCCGTCGTTTGACAATTtcggaggaagcagtgtgttgtgGAGGTCAAGTCAAGTCtcagGTTCTGAAGGAGACCCAGTGACAAAATTATTGACCAATCATGGTGAAGAAGAAGCGCATCCGCCTGATCGCTGAGATGGCCCGGAAGATCCGTGTGTACCGGGAGCTTAAGAATCGGCCACGGGAGTCTGAGAAGTATGCACTGGACTACGACACCATGACGCGACCGCACACCAGGAAGACCCTGCCCGTGCTTGCCTGGCAGGACGTGAGGAGAGAGAGCCGTCTCTTCTCCCTGCTGTCTGGCCTCAGGATGTTCGGGGTGGGCCACCTGTTCACACGCAAGTCCTGGCTGACAGAGCACCCTGAAGCACCTAGCTACTGGCAGGTCACCAAGGTCAAGGTGGACTACACTGCAGaaAACATGGACCACGGCAGAGCATGGGGAGTCCTGACCTATAAAGGCAAGCAGGAGAGTGAAGCAAAGGAGATGGACAAGGTGATGTACCATGACTGGCGTCTGGTGCCCAAACATGAGGAGGAGCAGTTCAAACTCTACAACCCTGTTCCCGAGCCCCCCATACGCTATGTGTCGTACCCGCCCCTGCTCCGTGCCATGCTCCTCGCCCAGCGGCAGAAAGATAAGCTAGGGTCGGCAGCTGAGGAGCCAACCTTACCCCTAAAGAGGGATGTCCTACTCAGCAAAGAGTACTTCAGAAGtcaggagaaaaagagggagaggcaggagggGACAGCAGTGTGAGAGAGGGGTCAAGCGGAAAGGGGGTGAAAGGTTACCAAGAAGGGACTGTGATGTCAACTTGGATAGATCATAGGCTGCGTTCTGTTTCTCAAAGTATTGAATTGGTGCAAGCATGGAGTTTTGACCATATCCTTTGCACCAATCCATTCCATTTAAATCCATGAGAAGGTGTAGGAGTGCACATCTCAGGAAAAGGGTAGAGAATTGGACCATCGCTATAGCCGTTTTCCTTTACATTCATATGAGCCTTCTATAACAATTCCACTGAATAGAAAGAATTTGGATTATCAGATGGACTTGAGTGACAGCTTGCTGTAAGGTTTCCACAACTGGCACTTGTCTCTTATGCGTATTGTGATGTGAtgcttgtgtgtttgtattgtaaaTAGTAAAATATAATACTACATTATGAAAAGAATGGGCACTCTTAGTTTTTCTTAAAATTGATTCATTCTAACTGGATGACTGGGTTAAGATCGataataaataaaaactattGTCCCACCCATGTCAAAGCAATTATTATTCCATATCCGTCTCGACAACTCTGATGTGTGTTTTTTTATCAAAGTTGCCGGGATGTCACTTGTCCTACTTAAaatcagtacactcgtaacaatTAAAGCATTGcgaaacttctattcgatcaaataaacctTTTGC

Function

symbol description
mrps34 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 32. Orthologous to human MRPS34 (mitochondrial ribosomal protein S34).

NR:

description
28S ribosomal protein S34, mitochondrial

GO: NA

KEGG:

id description
K17412 MRPS34; small subunit ribosomal protein S34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624339.2 True 1486 mRNA 0.47 5 59741166 59751234

Neighbor

gene id symbol gene type direction distance location
LOC110537883 LOC106600674 coding upstream 15910 59710093 ~ 59726547 (+)
LOC110537889 LOC106561172 coding upstream 32841 59705945 ~ 59708325 (+)
atp6v0ca vatl coding upstream 39010 59688669 ~ 59702156 (+)
LOC110537886 LOC106600678 coding upstream 67284 59672217 ~ 59673882 (+)
LOC110537890 NA coding upstream 129643 59599371 ~ 59611523 (+)
nme3 nme3 coding downstream 4030 59755264 ~ 59760527 (+)
cramp1 cramp1 coding downstream 131819 59883053 ~ 59936477 (+)
parp14rs1 LOC106600688 coding downstream 229512 59980746 ~ 60009869 (+)
lin7b lin7b coding downstream 565998 60317232 ~ 60322740 (+)
ap2a1 LOC106600693 coding downstream 663809 60415043 ~ 60463695 (+)
G1094095 NA non-coding upstream 5769 59734942 ~ 59735397 (+)
G1094084 NA non-coding upstream 55099 59685762 ~ 59686067 (+)
G1094010 amdhd2 non-coding upstream 147760 59591711 ~ 59593406 (+)
G1094098 NA non-coding downstream 170 59751404 ~ 59751776 (+)
G1094106 NA non-coding downstream 1728 59752962 ~ 59753224 (+)
G1094042 NA non-coding downstream 13583 59764817 ~ 59766890 (+)
G1094119 NA non-coding downstream 39708 59790942 ~ 59791240 (+)
G1094148 NA non-coding downstream 189893 59941127 ~ 59943329 (+)
G1093909 NA other upstream 198563 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 1518976 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1826334 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2623239 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2988219 56752418 ~ 56752947 (+)
G1094218 LOC100380853 other downstream 279769 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 634430 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 945453 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1065257 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 1203466 60931123 ~ 60965921 (+)

Expression


Co-expression Network