RNA id: XR_002475687.2


Basic Information

Item Value
RNA id XR_002475687.2
length 2083
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110537890
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59599371 ~ 59611523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccggtcgcggccggctgcgacagagcctgggctcgaacccagaatctctggtggcacagctagcactgcgccacccaggaggcccagaCAAAGGCTTCTTGATCCAGAGCTTGACACATGCAGGAATTACTGTGAACATTCCTCCATTCCTGAACCACAAAGGTTCATAGAGCGTGAGATGCATCTCACAAAAGACATAGCGAGAAATGGGATCCATGTTGATAGGGCAAATGCTTGACTATAAGATGTAAAAATCCTGAAATTCATCCCACCTTGTCTGCGTTATAGTAATGTGCTGGTGCAGACTTGCTGTGCACTTGTTAACCTCCAAGGCACACTCATCAGAGAAGTAGCTGTTGGTTGGGAAACGAGAACAACGAGGCATGAGGGTTTGGTGTTAAGGGACGAGTTGTCACATTGTCGAAGGAGTGCCTCCCTCAGACCATCCTGTGCATGGACATCCTGTGCCAGTGTGATGTGGTTGTGGAGACTACAGCACATCAAGCCTGTGGACGAACAATTCAGTAACTCATCAAATATGATACAATATTGTGTAAAACATTGAATTTGTAGATGTCTCAGTTTTGCCTGTCCCCTTTTccacatgttttatacatgaGACGTGACATGCGGAACATAAGGCTCACCCCACGAGAAGTATGATCAATGCCACCCTCAGCAAGGAGAAGTGATGTCTCTCCCATCCTGCATTTAGCAGAAACTGAAGCTCCACAAAACAAAGGGGAAAACAGCTACTGACAGGTGGTGCGAAGAAGACGCTGATCCagtgcccccccaaaaaacattggaATAAAACTTCAAGAAATGAGGTGTTGCTTGCGGAACATCCTGCTCATCCCATGAGAAGCAGAGCATGATCAATGCCACTTGCAGCAAGGAGATCTTCTGGAATGGATGTACTCTCACTCTGGGGggaccaaccaggaaCAACCCTAATTAGCTTCAgtggcaagccagcagtgggatgcagggtggtatgctgctggcccattgaagaggagtgggacaacattccacaggccacaatcaacagcctgatcaactctgtgcGAAGATGTCGAGCTGCATGCTGCAAATGGTGGtatcaccagatactgactggttttcttatccacacccctactttttttaaagtatatgtgaccaacagatccatatctatattcccagtcatgtgaaatctataaattagggcctaatgaatgtatttaaatggactgatttccttatatgaactgtaactcagtaaaagcaTGAATTGTGTTTATGTTGCACTTAtatttacaattggctcattcatcccccctcctctcccctgtaactattccccagctcgttgctgcaaatgagaacgtgttctcagtcaacttacctggtaaaataacggataaataaataaaaaaaattctgtCCAGTGTCGTAGAATTACAACATTATGTTAATCACATTACTTTTATATTAGAATGTATCCCTATATTAGTACATTCCCACTGTCATATCTAATAGGCAACATAATAGTGTTCTTAGAACTGTGTCTGTGAATTGAGAGGAGCCGCTGAGATTTTAACACTGACAGTAGATTTACGATGGCTTGGTGTCTGTGTACCTGTTTGTCTGTGCCAGGGACATCAAATCTCCTTTTCCTCTCCCATATGGCAGATGAATGCTGAACTTAATCGTTTGAGGGAATGACCTGCTGTCTATGTTACATTAGTACTTCTGTATAAACAAGCAGTAAATGACCAAGAGACAGAAACTTGTTGCTATGTAATCTTGATGTCTGTTGCATGAGAGCACAATGTACCTTTGTATAAATTCTCTCATCTGTGATGGACTTTACTATAAAATGTGTTGCATTAGTCCcgctggttgagttctcagtcATCACCTCCAGGGTGGTTATCAAACccccttttcttttcttttcttacAGTGGGATGCCGGAGGGTAGTGCGTTGAACTTGTGAAGGGGGTGGGCACAGTCAAACTGGATGgatgtctttgtctctgtgtctcgctTCATCAATTAAAACAGTCACCAATCAATTTCATTAATtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244194 lncRNA upstream 5965 59591711 ~ 59593406 (+) True G1094010
TU1244193 lncRNA upstream 11818 59586466 ~ 59587553 (+) True G1094009
TU1244187 lncRNA upstream 21698 59577380 ~ 59577673 (+) True G1094003
TU1244163 lncRNA upstream 82420 59516041 ~ 59516951 (+) True G1093979
TU1244158 lncRNA upstream 95754 59503416 ~ 59503617 (+) True G1093974
TU1244278 lncRNA downstream 74239 59685762 ~ 59686067 (+) True G1094084
TU1244279 lncRNA downstream 94883 59706406 ~ 59708269 (+) True LOC110537889
TU1244238 lncRNA downstream 113391 59724914 ~ 59726547 (+) True LOC110537883
TU1244289 lncRNA downstream 123419 59734942 ~ 59735397 (+) True G1094095
TU1244295 lncRNA downstream 139881 59751404 ~ 59751776 (+) True G1094098
XR_005035051.1 mRNA upstream 1093 59596614 ~ 59598278 (+) True LOC118937690
XM_036937913.1 mRNA upstream 40892 59546119 ~ 59558479 (+) True ccdc137
XM_036936691.1 mRNA upstream 59998 59508568 ~ 59539373 (+) False nme4
XM_021624340.2 mRNA downstream 60694 59672217 ~ 59673882 (+) True LOC110537886
XM_021624346.2 mRNA downstream 77146 59688669 ~ 59702156 (+) True atp6v0ca
XR_002475686.2 mRNA downstream 94422 59705945 ~ 59708325 (+) False LOC110537889
XM_036937911.1 mRNA downstream 98570 59710093 ~ 59725256 (+) False LOC110537883
XM_036937912.1 mRNA downstream 98671 59710194 ~ 59725256 (+) False LOC110537883
TU1244093 other upstream 56768 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1377181 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1684539 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2481444 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2846424 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 419480 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 774141 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1085164 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1204968 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1343177 60954700 ~ 60965595 (+) True mmp25a

Expression Profile