RNA id: XM_021624346.2


Basic Information

Item Value
RNA id XM_021624346.2
length 2055
RNA type mRNA
GC content 0.45
exon number 3
gene id atp6v0ca
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59688669 ~ 59702156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCCATGTCGCCATTTTCTACCGCTACACCACTGTTCCTGTAAAGAGGTGGATTCTTCGACTGTCGTCCTTGTGCTGCATGAAAGGGCCTTGCAATTGACAGTGTTGAGAATCGACAGAAACATTTACGCTTTCTCTGTCAGTAGCTTTCCTGTAAGAATGTCGTCAGAAAGCCCCGAATACTCCCCGTTCTTCGCAGTGATGGGAGCCTCTGCGGCTATGGTCTTCAGCGCATTGGGGGCGGCCTATGGCACGGCTAAGAGCGGAACGGGCATCGCTGCCATGTCGGTGATGCGGCCGGAGCTCATCATGAAGTCTATCATTCCTGTGGTCATGGCGGGTATCATCGCCATCTACGGGCTGGTGGTGGCGGTGCTCATCGCCAACAACATTTCAGAGAAAGTCACCCTCTACAAGAGTTTCCTCCACCTGGGTGCTGGGCTGAGTGTGGGGCTGAGTGGGCTGGCGGCTGGTTTCGCCATCGGCATTGTGGGCGATGCAGGTGTTCGGGGCACGGCCCAGCAGCCCAGGCTCTTCGTGGGCATGATCCTCATCCTGATCTTTGCAGAGGTCCTGGGGCTCTACGGTCTTATTGTGGCTCTCATCCTCTCCACAAAATAGAGAGAGCAAAGTCCATCTGTCCGTCTGTGTACGTCGAGTCAACGCTACGTCATCCATTCCATATATAAACGTCTAAGAAATAAAGAACAAATTGGAGAGCATGCCTTTACGCCTGGTTCCAAATCGACTCCCTTTAGCCACTTCTTTCCTAGTGACACTACCGAGTCCTTTGTAGATCTAATAGGTTTGAATGAGTGTTAGCCATCTCTTGGTCTGCCATCTCTTTGGGAcgccagggtagcctagtggttagagcgttgggctagtaaccggaaggttgcaagttcaaatccccgagctgacaaggtacaaatctgccctgaacaggcagttaacccagttaaccctaggccgtcattgaaaataagaatttgtatctatctgacttgcctggttaaataaaggttaaaaaaatatataaaaaaataaaatggtaaAGCCACTCCTACATTCATGCCTGTCAGATCTACGAGGGAGGCATCTTGAGGTGTtaagggctgtgtcccaaatggcaccatattcttctctaaatagtgcactattGACCAGAGTTATATTGTGCTCTGGTCAAACTCAAGATTTGGGACACGGCGTGATTTGAGATTGGGCGTGAAGTGAAAAGCGTCTCCTATTCCAGTCTTTTCCTGTACAGTCGTCAACTAGCCAAACCCTTATAAATGCGCTTTGTAAATGTAGTGACGCTTTCGTCCTGTGTGTGCTTGAGTATTGGTTTACCTCCTTCCTCCCAATTTCCTCTCATTtatgtgtctgctaaatggcttttattattattgttccttttgtttgtttttttctttaaatGTCCGAAGAACGGACTGTTGGACAAATAATTTTATTTTTCTGGGGACCATTTTCACATTAAAGGACCTAACTAATACGAGGACATGGATAACTCTTTTTTTTGGTTTGGTTGTTTTTTTCACTAATTATTTATGAAGATTTTGAAATGTTAATAAAACTGTTTTATCGAGTTCCCAATGAGATGgagaggtgtgtgcgtgtgtatatatatctctatctaatAAATATCTGTATAGCTAGATTAATTGCACTGTGGGTAATTGTTCTAAGGGCTTTGAATTCCTCTGGATGCATGTGTCCAGTGGAGACTGTCTCTGATGTGCAGATGTTGGAGTGGGAGTTAACTCTTTATGGTGGCTGGCATGTAAAAGTGTGTGTCTGTTAACTCTAAGACATCATTCTCATTTGTACTGTTGACCTGTAGTACTGGGGTGTAATCAATATTCCAAATGAAAACTAGACAGATTCTATTGGACAGATTCAGGTAGGTCCCCCGTTTGATTCGTAAATTGTTTCCATTGCAAGATGTAATGAGTAAACCCCAGCCATGTGGTTGCAGTTGCTCACTGGCGGGCCTCGTCTGTCTAATATCCAATTAAATCTCAACCTCA

Function

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244278 lncRNA upstream 2602 59685762 ~ 59686067 (+) True G1094084
TU1244194 lncRNA upstream 95263 59591711 ~ 59593406 (+) True G1094010
TU1244193 lncRNA upstream 101116 59586466 ~ 59587553 (+) True G1094009
TU1244187 lncRNA upstream 110996 59577380 ~ 59577673 (+) True G1094003
TU1244163 lncRNA upstream 171718 59516041 ~ 59516951 (+) True G1093979
TU1244279 lncRNA downstream 4250 59706406 ~ 59708269 (+) True LOC110537889
TU1244238 lncRNA downstream 22758 59724914 ~ 59726547 (+) True LOC110537883
TU1244289 lncRNA downstream 32786 59734942 ~ 59735397 (+) True G1094095
TU1244295 lncRNA downstream 49248 59751404 ~ 59751776 (+) True G1094098
TU1244303 lncRNA downstream 50806 59752962 ~ 59753224 (+) True G1094106
XM_021624340.2 mRNA upstream 14787 59672217 ~ 59673882 (+) True LOC110537886
XR_002475687.2 mRNA upstream 77146 59599371 ~ 59611523 (+) True LOC110537890
XR_005035051.1 mRNA upstream 90391 59596614 ~ 59598278 (+) True LOC118937690
XM_036937913.1 mRNA upstream 130190 59546119 ~ 59558479 (+) True ccdc137
XM_021622422.2 mRNA upstream 149296 59508569 ~ 59539373 (+) False nme4
XR_002475686.2 mRNA downstream 3789 59705945 ~ 59708325 (+) False LOC110537889
XM_036937911.1 mRNA downstream 7937 59710093 ~ 59725256 (+) False LOC110537883
XM_036937912.1 mRNA downstream 8038 59710194 ~ 59725256 (+) False LOC110537883
XM_021624335.2 mRNA downstream 8251 59710407 ~ 59725256 (+) False LOC110537883
XM_021624337.2 mRNA downstream 8618 59710774 ~ 59725256 (+) False LOC110537883
TU1244093 other upstream 146066 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1466479 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1773837 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2570742 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2935722 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 328847 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 683508 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 994531 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1114335 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1252544 60954700 ~ 60965595 (+) True mmp25a

Expression Profile