RNA id: TU1244279


Basic Information

Item Value
RNA id TU1244279
length 1477
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC110537889
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59705945 ~ 59708325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actactgtaccctgataatttggtcagataaccgtgtgtgtgtgtatgtgtacagtaggCGACATGTCCATGATAGCTATCTAATAACTATAGTTATGCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACtgtaggaggaggtggagaggactcAGGGAcaggtatcagagagagagaagggcagagaaaGATAAGAGGTCTGGGTCATCAGCTTCAGGCCACCAGCCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAACGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTCGCCACTGGTGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACCGGTGGAGTGAGACCCTCTACAACATCATCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGATGATGAAATGGAGGAAGCACCTCTAGATCTAGGACCACCTGAGATTATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGCcgtggagagaaacagagagagaaacgaaGAGGAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCCCAACCTGATGCTAACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCTGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGAAATGGAGTCAATTTAGCTGACCAGCTCacaggaaggacaggaagaggagaggagttgtctaGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCCGtttaaattcagtcaattcaTAAAGTCATTTGTTTATAAAGTCTTAGGATAGCATTCATTATTAGTGTTACATAGATTTCTGAATTGAAACTCATACGGAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAGGTcaatatatttctttcatttaAAACCACTTGAAAACCAGGGTGTTGAAACTTTTTGTGAAGTTATGTTCCATCGACTGGTCCATGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTGTTATGGCTACATATTATTCCCTTTttctcagagacagagatacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggtcATATCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATCGGTCTGCAGTTGTACCAAAAATACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTAcacattaatttaaaaaaaataataataatttacacgcacgcacacacctatttcaatagttttattttttaaaacatttttacaacACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244278 lncRNA upstream 20339 59685762 ~ 59686067 (+) True G1094084
TU1244194 lncRNA upstream 113000 59591711 ~ 59593406 (+) True G1094010
TU1244193 lncRNA upstream 118853 59586466 ~ 59587553 (+) True G1094009
TU1244187 lncRNA upstream 128733 59577380 ~ 59577673 (+) True G1094003
TU1244163 lncRNA upstream 189455 59516041 ~ 59516951 (+) True G1093979
TU1244238 lncRNA downstream 16645 59724914 ~ 59726547 (+) True LOC110537883
TU1244289 lncRNA downstream 26673 59734942 ~ 59735397 (+) True G1094095
TU1244295 lncRNA downstream 43135 59751404 ~ 59751776 (+) True G1094098
TU1244303 lncRNA downstream 44693 59752962 ~ 59753224 (+) True G1094106
TU1244236 lncRNA downstream 56548 59764817 ~ 59766890 (+) True G1094042
XM_021624346.2 mRNA upstream 4250 59688669 ~ 59702156 (+) True atp6v0ca
XM_021624340.2 mRNA upstream 32524 59672217 ~ 59673882 (+) True LOC110537886
XR_002475687.2 mRNA upstream 94883 59599371 ~ 59611523 (+) True LOC110537890
XR_005035051.1 mRNA upstream 108128 59596614 ~ 59598278 (+) True LOC118937690
XM_036937913.1 mRNA upstream 147927 59546119 ~ 59558479 (+) True ccdc137
XM_036937911.1 mRNA downstream 1824 59710093 ~ 59725256 (+) False LOC110537883
XM_036937912.1 mRNA downstream 1925 59710194 ~ 59725256 (+) False LOC110537883
XM_021624335.2 mRNA downstream 2138 59710407 ~ 59725256 (+) False LOC110537883
XM_021624337.2 mRNA downstream 2505 59710774 ~ 59725256 (+) False LOC110537883
XM_021624339.2 mRNA downstream 32897 59741166 ~ 59751234 (+) True mrps34
TU1244093 other upstream 163803 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1484216 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1791574 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2588479 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2953459 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 322734 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 677395 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 988418 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1108222 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1246431 60954700 ~ 60965595 (+) True mmp25a

Expression Profile