RNA id: TU1244236


Basic Information

Item Value
RNA id TU1244236
length 2074
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1094042
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59764817 ~ 59766890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaatatccaatgaatgtcgttccacttcatgattgtgtcccacttgttgatgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaagccttgaaatacagccacaggtacacctccaattgactcaaattatgtcaattagcctatcagaagcttctaaagccattacattttctgaaattttcttagctgtcaacttagtgtatgtaaacttctaacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgtaggaaaaataaattgtgtcatgcacaaagtagatatcctaaccgacttgccaaaactatagtttattaacaagacatttgtggactggttgaaaaattagttttaatgactccaacctaactctatgtaaacttccgacttcaactgtatgtaaatgtgattttaaaaaaaaactattataaatttgcaaacatttctaaaaacctttgtcatttggggtattgtgtgcagattgattagggggaaaaatgatttaatcaattttagaataaggctgtaatgtaacaatgtggaaaaagtcaaggggtctgaatacactatgttttccagtttcttgaaatactttgcaaatgcaacTTATTTATTTgtgaaaactgaaatggtctattcATTCATTTTCCATATTAGTaaactctcttatccagagcaacttagtagtgagtgcatacattttcatactggttccCCAATGGAATCGAAACCACAACCctagcattgcaagcaccatgctctaccaactgagccacattaTCACATCATCACAAACCACTTGATGGCTCAAAGTGCTCAATTACTGTATTCTGCAATGTTTTTCATCATGGTGATGTAAAGTGTACAGGTACAAACCTAGATGACCAGCCTATGTACAaaacagtaaagtacatttacattaagtggtttgtaaggatggtaaATGAATACTACACCAAAagtggttgttttccatgttattttaTCAAGATaaatatttaatttgatgtgTATGTTTTGTGTCTTTGCCCATAACTTTGCACCTTTTGATGTAAATGGACAGGGTTTTATtgtttctggattccattagaatgacaatcgCAGAGAATGGGACAGCAACTCTTCAAATTCCAACTGTTGAATCCTGCAAGATACTGTTCTTAATTATTCAACAACCTCTTTTGCCAAAGGAGGGATgattaatattttttttgtctgcAATACCTCTAATATTAGTAAAGGCACAATGCACTGCTTTTGTGTAAATGTTTTTATTCTATTTTTATTGTATTCTGATTGTTCAGTGGTTGCTGCAGCACCTTCAGTacccctacttcccgcggctatgccTGTGGGATGaactgagaccagccacctggacagctgatgaaactgtgggtttgcacaacatAAGAAAGCTCACCTGTGTGCTCGtcctcctcaccagggtcttgacttgactgcagttcggcatcgtaaccagtttcagtgtgcaaatgctcaccttcgatggccactggcatgctggagaagtgtactTTTCACatatgaatcccagtttcaactgtgctCGGGAGATGCCAGACccgtatggtgttgtgtgggcgagcggtttgctgatgtcagaatggtgaacagagtgccccatggtggcgatggTGTATAGGCAGTGTCATGACTCCTGTAAGGATCAGAATGGGTCGGATGAGACTTGTGGGGGGTGACAGTAATCAGGCCTCTTTCTCccacagaggggagagggggagctgCTGGATGGTCGACCATTCACACCCGGTTGTTAATTACAAGAGAGGGAGACTCTCTCTTTTGCCCTCCCAAAACTGCAACGTCCAAATGTGGATAACGGAACAATACTTTTAATGTGGGAAATGGTCAGTGGGGAACTATGGAAAACGAATGTAATATTGGTTTTCATTTTCTGATGTGATTAAAAACTGTATGAaccaaatactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244303 lncRNA upstream 11593 59752962 ~ 59753224 (+) True G1094106
TU1244295 lncRNA upstream 13041 59751404 ~ 59751776 (+) True G1094098
TU1244289 lncRNA upstream 29420 59734942 ~ 59735397 (+) True G1094095
TU1244238 lncRNA upstream 38270 59724914 ~ 59726547 (+) True LOC110537883
TU1244279 lncRNA upstream 56548 59706406 ~ 59708269 (+) True LOC110537889
TU1244318 lncRNA downstream 24052 59790942 ~ 59791240 (+) True G1094119
TU1244355 lncRNA downstream 174237 59941127 ~ 59943329 (+) True G1094148
TU1244385 lncRNA downstream 178939 59945829 ~ 59946071 (+) True G1094178
TU1244402 lncRNA downstream 207615 59974505 ~ 59974758 (+) True G1094195
TU1244403 lncRNA downstream 208537 59975427 ~ 59975685 (+) True G1094196
XM_021624344.2 mRNA upstream 4290 59755264 ~ 59760527 (+) False nme3
XM_021624342.2 mRNA upstream 4290 59755322 ~ 59760527 (+) False nme3
XM_021624341.2 mRNA upstream 4290 59755779 ~ 59760527 (+) False nme3
XM_021624343.1 mRNA upstream 4290 59755827 ~ 59760527 (+) True nme3
XM_021624339.2 mRNA upstream 13583 59741166 ~ 59751234 (+) True mrps34
XM_036937925.1 mRNA downstream 116163 59883053 ~ 59936477 (+) False cramp1
XM_036937926.1 mRNA downstream 116421 59883311 ~ 59936477 (+) False cramp1
XM_036937924.1 mRNA downstream 116723 59883613 ~ 59936477 (+) True cramp1
XM_021624357.2 mRNA downstream 213856 59980746 ~ 60009869 (+) False parp14rs1
XM_021624359.2 mRNA downstream 213856 59980746 ~ 60009869 (+) False parp14rs1
TU1244093 other upstream 222214 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1542627 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1849985 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2646890 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 3011870 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 264113 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 618774 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 929797 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1049601 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1187810 60954700 ~ 60965595 (+) True mmp25a

Expression Profile