RNA id: TU1244355


Basic Information

Item Value
RNA id TU1244355
length 2203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1094148
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59941127 ~ 59943329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tataaccccacccactttgccaaagcacagccaccACACCAAAGGGGTAATCAACAGACCACTAACGTACTACTGAGACATGGCCAAGTAtggcccacgaagatctccccccaCTGCACGAGCCACAAAACCGGACAAGAAGTTCCcgccagtgactcaacccattcAAGTATTGTGAAAAAAGCCTGGCACGATCTGATGCACCCCTTCTAGAGACGGCATGGGAGAGCACGAGCGAGCATGTGACTCAGCCTTCGTAATAggatcagaggcagagaatcccaatggagagaggggagcgggCCTGGCAGAGagagcaagggtggttcgtcacTGCAGTGCCTTGCTGTTCACCTTCgtacccctgggccagactacactcaaccataggacctactgaagagatgagtcttcagtaaagacttaaaaggTTGAGACAGTCTACGTCTCTGACATGGAtcagcagaccattccataaaaattgagctccaAAGTAGAAAGCCctacctccagctgtttgcttagaaattctaagaACAATAAAGAGGACTGCGTCATGAGCGtaggtgtaggtatgtacggcagaaccaaatcggagatatactgtaggtaggagccatgtaatgctttgtccatgtaatgctttgtccatgtaatgctttgtcgGTTAGCAGTAAacccttgaaatcagccctacccttaacaggaagccagtttaGAGAGgccagcactggagtaatatgttcAAATTTGTAGGTTtcagtcaagattctagcagccctaTTTAGCACTAGTTTAAGTTTTATTTAGTGTCTTATCTGGGTAACCTgaagagtagagcattgcagtagtctaatttTTGAAGTGACAAAAGCTTTTCTGTATCATTTTTTGACAAacagtttctgatttttgcaatgttacaaagatgggggaaaaaatgctctttaaatatttttttatgtgttcgtcaaaagagagttcagggtccagagtaacgccgaggtcctacagttttatttgagaccaGTGTATTATAATtgagattaattgtcagatctgACAACGAATCTTTGTTTTTTTGGGACCAAGagctagcatctctgttttgtctgagtttaaaagaaAAACCTTTGCCGCCTTCCACTTCCTTGTCTGAAACAGGCTTCCAGGataggcaattttggggcttcaccatgttccatagaaatgtacagctgtgtgtcgtctaGATAGCAGTaaaagttgacattgtgtttccgaatgacataaCCAAGAGGTAGCATATAGTGTAtattgaaaacaatagtggtcctaaaacgaaaCTGTGAGGAACACAGAAACTGACCAATGATTTGTCAGAGGATAAACCAAAACAGAGatgaactgatatctttccgacagatctAAACCATGCAAGAAAACTAGACCAGTTTAGGGTTTGCcatctccaaaagaatgtggcaaTCGATGGCGTCAAgtggcactaaggtctaggagcaggaggacagatgcagagccttgacgtcattaaaaggtaatttaccaccttcacgagtgagGTCTCAGTACTATGATGGCGTACATAACCAGACTGGAGCATTCCGTATACATTATGTCTTCAGGAAGGTAGTGAGTTGCtgagcaacagctttttcaatttTTACACATCCGGAGAATAGGGAAACGTTTAATATTGGCCAAGCACTGGAAGTGgttctttcagtagtttagttggaatagtgTCCAGTAGACAgctggaaggtttagaggccaggactatttttgtgaatgtatcgagagaataaaaaaaaacttgagtgtcttcATTGGTCGGAGTTCTGTGCAAACTCAGGACAACTAAAGTATGTGTGAAATTTCTAAAACTTATGTTTTAAATGCTAGGGTGTCATACTAATTTCGtcttttcatctagtagaattgCTGCACACTATTGAGGAAGAGAATTGTCTTGAGACCCATgtgtgtttgacaacagctgataatcagctGAGGGGATGCGCTTTACCAAAAAGATGAGCCTAGTATGCTAATTTTTGTTGCTTACTGCATTAGTTTTTACCTAACATAATGTTCTAAATAGTATATAGTACGACTAGTATGCAGTTTGAGTAGTAGGCAAAGATTTCGGACACAGCCATTGACTTGACACACTGACTTGGGTCTTAtttatactgagcaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244318 lncRNA upstream 149887 59790942 ~ 59791240 (+) True G1094119
TU1244236 lncRNA upstream 174237 59764817 ~ 59766890 (+) True G1094042
TU1244303 lncRNA upstream 187903 59752962 ~ 59753224 (+) True G1094106
TU1244295 lncRNA upstream 189351 59751404 ~ 59751776 (+) True G1094098
TU1244289 lncRNA upstream 205730 59734942 ~ 59735397 (+) True G1094095
TU1244385 lncRNA downstream 2500 59945829 ~ 59946071 (+) True G1094178
TU1244402 lncRNA downstream 31176 59974505 ~ 59974758 (+) True G1094195
TU1244403 lncRNA downstream 32098 59975427 ~ 59975685 (+) True G1094196
TU1244408 lncRNA downstream 36438 59979767 ~ 59980079 (+) True G1094201
TU1244427 lncRNA downstream 88686 60032015 ~ 60092081 (+) True G1094219
XM_036937925.1 mRNA upstream 4650 59883053 ~ 59936477 (+) False cramp1
XM_036937926.1 mRNA upstream 4650 59883311 ~ 59936477 (+) False cramp1
XM_036937924.1 mRNA upstream 4650 59883613 ~ 59936477 (+) True cramp1
XM_021624344.2 mRNA upstream 180600 59755264 ~ 59760527 (+) False nme3
XM_021624342.2 mRNA upstream 180600 59755322 ~ 59760527 (+) False nme3
XM_021624357.2 mRNA downstream 37417 59980746 ~ 60009869 (+) False parp14rs1
XM_021624359.2 mRNA downstream 37417 59980746 ~ 60009869 (+) False parp14rs1
XM_021624358.2 mRNA downstream 41670 59984999 ~ 60009869 (+) True parp14rs1
XM_021624361.2 mRNA downstream 373903 60317232 ~ 60322740 (+) True lin7b
XM_036937935.1 mRNA downstream 471714 60415043 ~ 60463695 (+) False ap2a1
TU1244093 other upstream 398524 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1718937 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 2026295 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2823200 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 3188180 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 87674 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 442335 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 753358 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 873162 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1011371 60954700 ~ 60965595 (+) True mmp25a

Expression Profile