RNA id: XM_021624340.2


Basic Information

Item Value
RNA id XM_021624340.2
length 1666
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110537886
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59672217 ~ 59673882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAACTTGAGAGTGGGGTCCACTTTCTACAGAAGCAGTTACTCTCCCGCCTTGGAAATGGGTGAAGGTGTCTAGGAGCTTCAGCAAAATATAACTATAAAATAGAAGCAACTACCCTATAGGCTACAGCATTCACGACAAGACTCTCCATGAATGGATTACATTCAGAAACAGAGGTGTAATGCATCTTAATCTCGGGTGGCATCTCCTCCGGTGATAAGGATTCTGAGTTTTCTAAAGGCATGTTTGTTTAGGAAGTTTTGGCTTATTTATCCTCAAAGCACTGAGAGGAGGCACAGATgagaagagaaaaaaagaaaactcTACTGAGTTTGTGTGTGGTGGAACATTGATGGAAATCCGTTATATCCATTTAATGAATTTAGGACGCTCATGCGCTCTATGGTCAAAGGGAATGGTCTGTATTGATGTATTCAGTTTAGTGATGGTTACCGTTCTCTTCCTCACTTAGTAACTtgtcaacaaacaaaaaatacattGCCGATTTCTGCGCTGCAACTGGGACGGATATCTTATTTAAGCACACACCACCTCTCCAATCCAAATGTCAAAGTGAGACACTAATGCAGCACTTGCTCTTTTGCTGTAAGTGAAAATAATTTGCGTAAATAACAGCTCGAGCTATAGAACATGGGGATTTCTCCGGCGGCTCTGCTCTATGTCATAGCGACCATCCACCTCGGTGTCTCTCAGCATTTTTTGCGTCTGCGCCCTTCGCCCAGCGAGCATCTCCCAGTGCCCGGTCTTAAAGAGGACCCTGACCCAAAATACGACCCGATGAAACAGGACCTGGCCGAACGGACACTGAAGAGGAAACTCGGGAGAAACTTTGACCCCGTCTTCATGTCAATCAACAGCCCCCCTGTTGTGGAGAACCGGACTGCCCTTGAAGCACAGTCCAGACTGATGGGACCTATTCCCAACCAGCTGAAACAGCTGGACCTGGTGACAGTGGGCAAGAAAGcccgtcggaagtttacacagtGGTTGTGGGCATACACGCACTGCCCCGTGGGCTATGTATGGAAGGACTTGGGCGTGAGGTTCTGGCCGCGTTACGTCAAGGAGGGACAGTGTCTGAATGAGCGCTCTTGTTCGTTCCCGGCGGGGATGTTTTGCATGCCCGACAAGTCAGTCACCAAGACATTCCTCCGCTGGTACTGCCAGGGCTTTCTCCAAAAGAAATACTGCATGTGGATACAGGTTCAATACCCCATCATATCCGAATGCAAGTGTTCCTGTGTAGAATAGGCCTATTTAACTCGGGGTAAAACTATTTCCATTCAAATTTAATTAAACCCTCATCATACAAAATCGGATTTTGTTAATTAAAAAGCTATTACATTCACATATAAACGTGTAAACATGTAGCTGCAATAGCTTACATCAAGCGTGATAGGGGCAATTTCAATTGGAATTGGAAAATGGAACATGTACATGAACACATGAACGTCTTCACAAAGTTGTCTTGACAAAGTTTgggagtttttttgttttttatgtcTGGCACGGGATGGAGAGTGTATCACGGTATAGGCTACTGTtaacagtttttatttatttaatttattaccACAGCCATTGTTAGTATAAAACTATGATTATGTATAGATGTTTATATGTGTTTCTCTGAAGGCTAATAAAA

Function

GO:

id name namespace
GO:0045596 negative regulation of cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244194 lncRNA upstream 78811 59591711 ~ 59593406 (+) True G1094010
TU1244193 lncRNA upstream 84664 59586466 ~ 59587553 (+) True G1094009
TU1244187 lncRNA upstream 94544 59577380 ~ 59577673 (+) True G1094003
TU1244163 lncRNA upstream 155266 59516041 ~ 59516951 (+) True G1093979
TU1244158 lncRNA upstream 168600 59503416 ~ 59503617 (+) True G1093974
TU1244278 lncRNA downstream 11880 59685762 ~ 59686067 (+) True G1094084
TU1244279 lncRNA downstream 32524 59706406 ~ 59708269 (+) True LOC110537889
TU1244238 lncRNA downstream 51032 59724914 ~ 59726547 (+) True LOC110537883
TU1244289 lncRNA downstream 61060 59734942 ~ 59735397 (+) True G1094095
TU1244295 lncRNA downstream 77522 59751404 ~ 59751776 (+) True G1094098
XR_002475687.2 mRNA upstream 60694 59599371 ~ 59611523 (+) True LOC110537890
XR_005035051.1 mRNA upstream 73939 59596614 ~ 59598278 (+) True LOC118937690
XM_036937913.1 mRNA upstream 113738 59546119 ~ 59558479 (+) True ccdc137
XM_036936693.1 mRNA upstream 132844 59508568 ~ 59539373 (+) False nme4
XM_021624346.2 mRNA downstream 14787 59688669 ~ 59702156 (+) True atp6v0ca
XR_002475686.2 mRNA downstream 32063 59705945 ~ 59708325 (+) False LOC110537889
XM_036937911.1 mRNA downstream 36211 59710093 ~ 59725256 (+) False LOC110537883
XM_036937912.1 mRNA downstream 36312 59710194 ~ 59725256 (+) False LOC110537883
XM_021624335.2 mRNA downstream 36525 59710407 ~ 59725256 (+) False LOC110537883
TU1244093 other upstream 129614 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1450027 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1757385 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2554290 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2919270 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 357121 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 711782 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1022805 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1142609 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1280818 60954700 ~ 60965595 (+) True mmp25a

Expression Profile