G1109572 (LOC106607368)


Basic Information

Item Value
gene id G1109572
gene name LOC106607368
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73468972 ~ 73471788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1261495
TGGTCATCCATGTCCTCTATCTGCCTCTTCACATAGCTGTCGATGCGCTTGCGGTAGGTGCGGTTGGTGAGCTTCCCCACCATGCCCAGCCCGTAGGGCCTCTTCTCCCGAGCGAACAGCTTCTTGACGGGCACAACGATGCGCTGACCCCGTCGCTGTCCGTTCACACTCACCACCTCCTGCCGCAAGGGCACCTTGGGCGGTCCTGGGGTTCCCTCTTTGGCCTTACGCCACCCTCGCTCCAGAGgcAGCATGAGATGGCTCCTCTCCAGTTCACTCTTGTCCAGAGCGCTGCCGGTCAGCTCCGTCTCATCCAGTTTACTGCCCTCCTCCTGCACCACATCCATCATAGCCGCCTCCGACGGAGACTCAAACACCTCGTCAGCGTATGTGGACAACTCTTCCTGCATCAGACAGTCCTGGGGGAGGGATTGGGAGGGGGTAGGCCAGGTCTGAGAACAGTAGTGGGTGGGAA
>TU1261494
CTCCTTTTGAAAATAAATGTATCCGCCCCGATGGAACTCAGTGTTGTTCTAGAACGCCGGAGGCCGACTGATTCCACACAACTGATCAGGCCATGCTGTTTCACTGAGGGTACCTTATCGATTAAGGGAAGAGTTTGGTCATAGTGGTACTGGGTGGGTATGGTTTGGatctgtgtgtacagtacagtagagggcTTTAGCAGCTGACAGTCTCTAAAATAATTATTCACTTCCTTCAATAGAATGTCTCGTCACACAGCAAGCTCACCTTAACCAGAGCTGCTGCTGCCCTGAAGCTCATCTTGGCGACAGACTCCCTCTTGCGTCGCCGCGGCAGCCGGTTGAGGCCTGAgcgggaggaggtgaaggagcaGAGGGAGGCGGCGCCGGGGGTGACGGGGGTCTGGGGCACGCTGTAACcgtccacctcctccaccatacGGAACGCACGCCCCCTCGCCAACGGGTCCACGATCTTCTGCATGCCAAAGGCGTGTGCTGAGGAGGGTACGTAGAGGGGCGGGGGCGTCTCGGTGCTGGTCAGAGAGATGTTGTCCTGACTGGACAGGTCCATCTCCCGGATCACCTGGGGCTTCAGACGGCCATAGCGCATGCTGCAATGGCGCAGACTCTTCCTCTGCCATTTCTGGGTGGCATCGCCGTCCTTACTGACCCCGAACCAGTCCGCTGTGCCCCTGACACCACAAACACCAGCCACTCAGTCCGCGGGAAGCACACATCTCATCTCACAAACTCCAACCTATCCACAGAACTCTCTCTGATCACCTAGTTCCACAGTACTTCTCTTGTAGAGGGAGTCTGCTAACTCCA

Function

NR:

description
PREDICTED: inactive rhomboid protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1261495 False 475 lncRNA 0.60 2 73468972 73469689
TU1261494 True 831 lncRNA 0.56 2 73470700 73471788

Neighbor

gene id symbol gene type direction distance location
LOC110538456 LOC106601142 coding upstream 6081 73459899 ~ 73462891 (+)
LOC110538457 LOC106601143 coding upstream 25590 73439769 ~ 73443382 (+)
mgrn1b LOC106607363 coding upstream 37564 73423331 ~ 73431408 (+)
LOC110538462 rpc11 coding upstream 82773 73384755 ~ 73386199 (+)
LOC110538463 LOC106601093 coding upstream 92228 73335021 ~ 73376744 (+)
mpg LOC106601084 coding downstream 61489 73533277 ~ 73539888 (+)
LOC110538454 NA coding downstream 81520 73553308 ~ 73559544 (+)
LOC110538451 LOC106601078 coding downstream 90713 73562501 ~ 73563404 (+)
LOC110538450 LOC106601071 coding downstream 97022 73568810 ~ 73569803 (+)
hba1 hba1 coding downstream 113629 73585417 ~ 73586189 (+)
G1109553 NA non-coding upstream 57307 73392650 ~ 73411665 (+)
G1109526 NA non-coding upstream 78631 73332894 ~ 73390341 (+)
G1109483 NA non-coding upstream 80146 73387598 ~ 73388826 (+)
G1109535 NA non-coding upstream 117948 73350624 ~ 73351024 (+)
G1109591 NA non-coding downstream 32826 73504614 ~ 73505170 (+)
G1109636 NA non-coding downstream 82985 73554773 ~ 73555042 (+)
G1109637 NA non-coding downstream 83955 73555743 ~ 73555973 (+)
G1109608 LOC106607371 non-coding downstream 88540 73560328 ~ 73561312 (+)
G1109607 NA non-coding downstream 94255 73566043 ~ 73590679 (+)
G1109505 NA other upstream 162818 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1450682 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1526173 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2562543 70902905 ~ 70906429 (+)
G1109778 NA other downstream 361855 73833643 ~ 73834606 (+)
G1109786 NA other downstream 374467 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1488478 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1947001 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2273351 75745139 ~ 75745620 (+)

Expression


Co-expression Network