LOC110486728 (qtrt1)


Basic Information

Item Value
gene id LOC110486728
gene name qtrt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50827395 ~ 50832708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558541.2
TTAAATGACAAGACATGCAAGGATAGCTTCTACGAGTTTGCTGTCAATGATATTGTAATGAAGACATATTTTTTACAACTCAATGCAAATATTAGATTACTGTAGTTCCGGTACGTCACGTGTTTGTTGACGTCGTCTGTGAGCAACAACATGGCTGCGCCCATAGCCAGAGGAGCTGCAACGAGCAGCTTTGAAACAGGCATGGTTGTCAAGAAAGCCGTTTCCATCGTTGCTCCTCTTGCTCTCCGAATCATCGCCGAATGTCCAGTGACCAAAGCGAGGGCTTGTGATCTCAAACTCCCTCACTGTACGGTCAGCACCCCAGTGTTCATGCCTGTTGGTACACAAGGCACGATGAAGGGAATCACAGTGGACCAACTCGATGATCTGGGATGTCAGATTTGTCTTGGCAACACATACCACTTGGGTATGAGGCCGGGTCCTGAGCTGATTGAGAAAGCAAATGGCCTGCATGGCTTCATGAACTGGAAAAGAAACCTTTTGACTGACAGTGGGGGCTTTCAGATGGTGTCTCTTGTTGAACTATCAGAGGTTACTGAGGAGGGGGTCAAGTTCAAATCTCCTTACGATGGGAAGGAGATCCTTCTGAGTCCTGAGCAGTCAATCGCCATACAGAACAGTCTGGGGTCAGACATCATGATGCAGTTGGATGACGTGGTCAGCAGTACGGTGACTGGGCCGCGAGTGGAGGAGGCTACGTGGAGATCGATTCGCTGGCTGGACCGCTGCATTGCAGCCAATAAGAATCCAGATAGACAGAACCTGTTTGCCATCATCCAGGGGGGCCTGAACACAGAGCTGCGCAAAGCCTGTCTAGACGAAATGACAAAACGGGATGTTCCTGGCTTTGCTATCGGTGGGCTGAGCGGAGGTGAGGAGAAGGATGATTTCTGGAGGATGGTGACACTCAGCACAGACCATCTGCCTCGGGAGAAGCCTCGCTACCTCATGGGGGTTGGTTATGCAGTAGACCTGGTGGTGTGTGTTGCTCTGGGTTGTGACATGTTTGACTGTGTCTTCCCAACACGCACTGCAAGGTTTGGCTCAGCTCTGGTCCCGTGGGGATCTCTGACGATTACCAAGAAGCAGTTTGCCAAGGACCTACAGGCAATAGATCCAGACTGCCAGTGCCCCACCTGCAGGAGGCACAGTCGGGCCTATCTGCATGCTCTTTTCAAGAGTGACACCGCAGCCATGCATCACATTACCATCCACAACATCTCCTACCAGCTCACTCTGATGCGGTCGATGAGACAGAGCATCATAGATGGTCGCTTCCCAGACTTTGTGAGGACATTCATGAAGAGAATGTTCCCCTCTCCTGAACAGTATCCAGGCTGGGCGGTGGATGCTCTAGGAACAGTCAACATCACATTGAATTAAACTACTTTATACAGCCTGGGACTTGCTCTGAAACGGCCAATAAGACCTTTTATTTGAGAAATCAGATCTCCTTTGGTTTGTTATGAAATCGCCTTTTCTACTTTTATGCTTCACTTTGCTTCTGCCTGTATATTCTGTCAGACTTACTCCTGAATGGTTCAATGACGTTCAATGATATTTTACTGTCTTTATGATTTAGTTACGTTCATGTTTTGTTACAGTACGgttctttttttgtgtgtaattTATATGCTAAACATTCTGTTGAAAGTTCTGAATTTACATTCTACTGCTTTCAACTCCTGTCAGACATACAGTACTTTTGTGACATCCAGTTTTCACTCTGCAGTCCTTTTCAGTGTATGATAATGTAGGAGTGGAGTAGTGTTGTTGAAGTCCAGgaactgtctcctctgatatatTCAGACACTTTTAGTTGTTACCATGGCTACAGACCAGCGGCCCACCCTCTTGAAATTCCATGCATGACTTCTAACACAGAAATGTGGTCATGAACTAACAATTAGAGAGATTTTGGAACATTTCCTAGGGCTTATTATCGACCTTTACCAGCAGGAGGAAGTGAATACATTTCTATAATTGAGTTCTGTTTTGTTGTGCAAGAGATGACACAGGAACCCACATTTGTGTGCTTTTGACTTTGGGCCACTAGAGGGCAAAAATATTCTAAACCTGATGAAAATGCACGTGAGCCAGATTACGCCATCTGTTTAGTTGACATGCTGGAGAAGTTTCATAGGAAGGAATGGGAATTCTACCCACCCAGTTTGGTTcaaaagcagagaagtagagcATGTATGGTTTAGTCAGATTTGCATGCTGAGGGCAGACAGAGTAGTGGCAAACCAATTCTCAAGGAAGTGGCTTAGGGGATCACAATTTCCTGTGTCTCCGAAGTGCTACTTTCTCAAACAAAAAATGACACCCAATACAATGAGTTCCAGCAGTCAAGACAGTCGGAGGACAGAGAATAATAGGGTGTCATAATCTGCCATTGAAGCAAACCAGGATCAAAGACACATTGGAAAACAATAGGCAAGATTTTTTTTGTAGATTCCAATGTTTAGGTTTTTGTTCCGGAAACAACATTTTGTTTAATTGGTTCCTGTTTTTCTATTAGAAATTGAGGTCCTTTCTGACATCTAATTAAAGCTTTAATAGGCTACGTTGCAGTTGTAAAAGCACCTGTTGCCTCTAGTTGAGAGACAAGATCTTTAAATAAAGACTATAGGCTACAGAGTTTATACATGGGTTGTAATTGTTAATACCTGTCAGTTATTAGTTTATAATGGTAAACATATAATAATAAACATGTAATAGTAATGA

Function

symbol description
qtrt1 Predicted to enable protein heterodimerization activity; protein homodimerization activity; and queuine tRNA-ribosyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA-guanine transglycosylation. Predicted to be located in mitochondrial outer membrane. Orthologous to human QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1).

NR:

description
queuine tRNA-ribosyltransferase catalytic subunit 1

GO: NA

KEGG:

id description
K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558541.2 True 2751 mRNA 0.44 9 50827395 50832708

Neighbor

gene id symbol gene type direction distance location
LOC110485208 LOC106606837 coding downstream 2962 50732097 ~ 50824433 (-)
LOC118938085 NA coding downstream 97300 50719812 ~ 50730095 (-)
LOC110486719 LOC105013088 coding downstream 130305 50690182 ~ 50697090 (-)
LOC110486716 LOC106601616 coding downstream 174111 50647434 ~ 50653284 (-)
LOC110486713 NA coding downstream 193705 50631005 ~ 50633690 (-)
LOC118938315 NA coding upstream 34620 50867328 ~ 50868744 (-)
LOC110486730 tmed1 coding upstream 43807 50876515 ~ 50883694 (-)
LOC110485210 adgrl1 coding upstream 177911 51010619 ~ 51230197 (-)
LOC110486734 LOC106606824 coding upstream 492198 51324906 ~ 51329316 (-)
LOC110486738 LOC106606773 coding upstream 572549 51405257 ~ 51412417 (-)
G1185048 NA non-coding downstream 40595 50785477 ~ 50786800 (-)
G1185012 NA non-coding downstream 118268 50708892 ~ 50709127 (-)
G1184978 NA non-coding downstream 118677 50707867 ~ 50708718 (-)
G1184979 NA non-coding downstream 123413 50703479 ~ 50703982 (-)
G1185123 NA non-coding upstream 103650 50936358 ~ 50936584 (-)
G1185154 NA non-coding upstream 157665 50990373 ~ 50991627 (-)
G1185128 NA non-coding upstream 170783 51003491 ~ 51007735 (-)
G1185194 NA non-coding upstream 231415 51064123 ~ 51082403 (-)
G1185256 NA non-coding upstream 340340 51173048 ~ 51173497 (-)
G1185046 NA other downstream 45537 50780265 ~ 50781858 (-)
G1184986 NA other downstream 198856 50626647 ~ 50628539 (-)
LOC110486698 LOC106601594 other downstream 991063 49831067 ~ 49853671 (-)
G1183706 NA other downstream 1138939 49685338 ~ 49688456 (-)
G1186080 NA other upstream 489092 51321800 ~ 51323931 (-)
G1186075 NA other upstream 519601 51352309 ~ 51373954 (-)
G1186154 NA other upstream 657069 51489777 ~ 51490241 (-)
G1186381 NA other upstream 1092255 51924963 ~ 52030660 (-)
G1186216 NA other upstream 1177982 52010690 ~ 52011211 (-)

Expression


Co-expression Network