LOC110486743 (LOC106601710)


Basic Information

Item Value
gene id LOC110486743
gene name LOC106601710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51470090 ~ 51508651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558572.2
gagaggatggacctGCAGAGGTGAAAGTAGATGATTTTTGTTAGGCTTCTACTACAGCTACACCTAAACACTCTCACTCTGTTCTAACGTCGAACCTTTCAAAGTAAAAGGGAACTCTTTCTCTCACGAACACTCGCACACAAACACCGCATTGAGCGCGTTGTCAGAGATGACAGCATAGAAATTCCACCCGGTATCCTACATGCATACACAAAACTGTAGCTGTGGTAAAATATAACGAACACCGGGAGCTTGGTTCGCTTCGTTGCATAGGGGGACTCACTGCCTATCCAAAAGGCAGAGCCAGTCCCCTGACCAACAGACTAATTCATTTGAATTAGTTCATGGATTTAATCATCGCCGATGTCACGAGATACGTAACGGATACGGGGATTAATATTACAGGCACCGAGAGTTTACACCGCGCCCGGTGTACTGACATTCTCGGCAACGACTCGGTATATTAAACCGGTGCCTCGGTAACGAGACCGAGGGAGAACATCAGTTATTTCAGTAAGACTGTCGTGCCATTTCGATATACCATGGTTCCGGGATTTGAATAGGTAGGTTATCGTAACGAAACCCACTGGGAGTCATTAGAACAAAAAGCGCTCCTTTAATTTTCTACGCCTGCTTCGCGGCAGCAGGTTGGGATAATAGCCACCACCACCAGGATTGCACAATTCTCCATTTCACATGGGCGAAGGCAGGGCTCGGTTCTGCTTTGGTTGGACCCGGGCTCGCTGTCAAGAACAAGACAAAGGTGTGTCGGACCCTGATAGGGAACCGGAAACGCGAGAGAGATGGGCCGAACTGTTCGACCAACTGGACCTCAATAAAGACGGTAAAGTCGACGTCAACGAGCTGAGGATAGGACTCGCTGCACGCGGTTTACTTCGCAGTGACGCGGAGGAGATAGTGCGTGAGAGTGACACCAACCATGATGGCTTGCTGGACTTTGAGGAGTTCTCTCAGTACCTGTGGGCCCACGAGAAGGAACTGCGGCTCATGTTCCACACACTGGACCGCAACCATGACGGGCGCATTGATGTCGGGGAGATTCAACAATCGCTGCACAACCTGGGACTGGAGGTGTCCACAGAACACGCCATCAAAATactacagagtATGGACAGGGATGGCACCATGACTATCAACTGGAGTGAGTGGCGAGATCACTTCCTGTTTAACCCTCTTCACAACATGGAGGGCATCGCCCACTACTGGAAACACTCTCTGATGTTTGACATCGGAGAGCACATGACAGTGCCGCCAGAGTTTTCCCAACAAGAGCGCCAGTCGGGGGTAGTGTGGAGGCAGCTGGTTGCCGGGGCGATGGCAGGGGCGGTGTCACGTACAGGAACCGCCCCCCTCGACCGTCTCAAGGTCTTCCTACAGGTGCATGGCTCCAGCTCTAGGGGGATCAACCTGTGGACGGGGCTGAGGGGGATGGTCCAGGAGGGGGGTGTACGAGCCCTCTGGAGGGGCAACGGCATCAACGTCCTCAAAATAGCCCCAGAGTCTGCCATCAAGTTCATGGCCTACGAACAGATCAAGTGGCTGATCCGGGGCAGAAATGAAGCGGGTACTCTGCGGGTGCAGGAGAGGTTCATCGCTGGCTCGCTGGCTGGAGCCACTGCACAGACCATCATCTACCCTATGGAGGTGCTGAAGACTCGTCTCACCCTGAGGAAGACTGGCCAGTACTCTGGCATTGTAGACTGTGCCCGTCAGATCCTGAGGAAGGAGGGGGTGCGAGCCTTCTACAGGGGCTACGTGCCCAACACACTTGGCATCATACCGTATGCTGGAATAGACCTGGCCGTCTACgagACTCTGAAGAATGCCTGGCTCCAGCGGTACAGTAAGGGCTCTGCTGACCCGGGGGTGTTGGTACTGCTGGGCTGTGGTACTGTGTCTAGTACCTGTGGACAACTGGCCTCCTACCCCCTGGCTCTCATTAGAACACGTATGCAGGCCCAGGCCTCCACTGAGGGCGGGCCCAAGCTGTCCATGGTCGGTCAGTTCAAGCACATCATATCACATGACGGGGTACCTGGGCTCTACCGCGGCATCGCCCCCAACTTCCTGAAGGttattcctgctgtcagcatctCGTACGTGGTATACGAACACATGAAGAAGGCTCTGGGTGTGAAATcgtagagagaggaagtgagaggcaGAAGAAAGAGAGGTATATAGAGTGCAGCTCTTGGATTTCAAGATGGAGAGGAAGACAGCAGAGAATTGAGGGATAGAAGACAGATAGTCCACCCTTTTCATACACATTCAGAAAAGAGAGCTGATCTCGGCAGAATCTGGGCCATTCTTCCTCTTTGTTTATGAGCTGTAACCCCCATTATAGTCACATCTCCACAATAAGTCTGTGTGTTGCCCTCCAACCAAACACAGTGAAGCACACAGTACAGTTTGTATACCTATATGTAGGCACTTATCTAAGGTCAGTTTCATGTTTTGTGAATATAAAGTGATCTTCCTCCAA
>XR_005035586.1
CCAACTGGACCTCAATAAAGACGGTAAAGTCGACGTCAACGAGCTGAGGATAGGACTCGCTGCACGCGGTTTACTTCGCAGTGACGCGGAGGAGCCCCCTACATTGAGTCTGAGAACTGACAGCAAACAGCTGATATGAAGGAATGTTGTCCACAAAAGGAGTTCTGGCAACCCCCGCAGCAGGAATGCCATGATACAAAATCAGCTTTCCCAAGATAAAGGGGCCTGTGAagacagaaaaaaagaaaagggGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCATGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGAAATGCTGTAAAGCCTGTGAAGACAGACCAAATAAGGGGGATATGCTGTGAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCCATGAAGACAGATCAAGTGAAGACAGACCAAAGAAGGGGGATATGCTGTGAAACCTGTGAAGACAGACCAAAGAAGGGGGGGTTATGCTGTGAAGCCTGTGAAGACAGACCCAACCAAAACTGCTACATAGACAGGCTCCTGGATCTCCTCTTCAGCAAGGTCACCCTTGATCCAGTGCCGTATGTGGGGAAGATGTGCGAGCTGTCCATCCCAGAACCCGTCTGCCCAGTGTGAGAGGCCTGACAAGGAGGAGACCATACCTGGTTTTGTCTCCAGCATCAATCTTCGGGGTGACTGAAGTCAAGTGGGTGACTGAAGCCTGCTTGATTGAAGCAGGTTACATGGTCCCCCTCCTCTCCCGATCCCGTCCCATCAATCTCTGTAGTTGGTTGCATTTCCCAAAGTCTAAGTAATTTATATGATATCACATTTTATTTTACATAGTTTTTTCTAACATTTGGACGGGAGATGAGAGTTACAAATTGTAAGACTCAATGGGGTCCTGCACACTGTAGGGCAGCAGGGTGCCTATATTGCGGTTTATGGctctatttgatttatttttttatgtcaAATGATGTCTCACCATTATTTCTTACCTTTATTTCTCATGAATGTCCATGTTGATCAATATTTCAGATATGCTTGCCTAATGTAAATTAACAAATAAATGTCTGATCAATACATACAATTCTGAACATATTGTCAT
>XR_005035585.1
GATAGGGAACCGGAAACGCGAGAGAGATGGGCCGAACTGTTCGACCAACTGGACCTCAATAAAGACGGTAAAGTCGACGTCAACGAGCTGAGGATAGGACTCGCTGCACGCGGTTTACTTCGCAGTGACGCGGAGGAGGAAGCTAATCATGAAGATGGATGCTGAACCATCATTGACAGTGGATCAGTTTGTCTTGCAAGCACTGACCATAATCCCCCTACATTGAGTCTGAGAACTGACAGCAAACAGCTGATATGAAGGAATGTTGTCCACAAAAGGAGTTCTGGCAACCCCCGCAGCAGGAATGCCATGATACAAAATCAGCTTTCCCAAGATAAAGGGGCCTGTGAagacagaaaaaaagaaaagggGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCATGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGAAATGCTGTAAAGCCTGTGAAGACAGACCAAATAAGGGGGATATGCTGTGAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCCATGAAGACAGATCAAGTGAAGACAGACCAAAGAAGGGGGATATGCTGTGAAACCTGTGAAGACAGACCAAAGAAGGGGGGGTTATGCTGTGAAGCCTGTGAAGACAGACCCAACCAAAACTGCTACATAGACAGGCTCCTGGATCTCCTCTTCAGCAAGGTCACCCTTGATCCAGTGCCGTATGTGGGGAAGATGTGCGAGCTGTCCATCCCAGAACCCGTCTGCCCAGTGTGAGAGGCCTGACAAGGAGGAGACCATACCTGGTTTTGTCTCCAGCATCAATCTTCGGGGTGACTGAAGTCAAGTGGGTGACTGAAGCCTGCTTGATTGAAGCAGGTTACATGGTCCCCCTCCTCTCCCGATCCCGTCCCATCAATCTCTGTAGTTGGTTGCATTTCCCAAAGTCTAAGTAATTTATATGATATCACATTTTATTTTACATAGTTTTTTCTAACATTTGGACGGGAGATGAGAGTTACAAATTGTAAGACTCAATGGGGTCCTGCACACTGTAGGGCAGCAGGGTGCCTATATTGCGGTTTATGGctctatttgatttatttttttatgtcaAATGATGTCTCACCATTATTTCTTACCTTTATTTCTCATGAATGTCCATGTTGATCAATATTTCAGATATGCTTGCCTAATGTAAATTAACAAATAAATGTCTGATCAATACATACAATTCTGAACATATTGTCAT
>TU1352615
tttttttacgtaaataatcaataacatttaagatgggataaactgcgttcaatagcggatacaaacaaagtggagcgagctttcaggtcacgcgcctctaacaaacagtacacttcactCGACCCTTGTTCTGAACTGCCCTACTTCTttattacacaaaggaaaaacatcaaccaatttctaaggattgttgacatccagtggaagcaagtgcaagcaagtgccttagaaatctagatccccatagaaaacccattgaaaaaagagtgacctcaaaaaaaatacctggatggtttgtcctctgggtttcgcctgccaaataagttctgttatactcacagaaatcattcaaacagttttagaaacttcagagtgttttccatacagatatactaataatatgcatatcctagcttctgggcccgagtaacaggcagtttactttgggcacgcttttcatcatgacgtgaaaataccgccccctagccttaagaagtttaaAACCGCCATCACATGTGCACATCATACGGCTTTGTTTACAAACCATAAATAGCTCAAGTAGAATGTGGCAGAACGATACTGGTAACTCAACTTTTCATCTGTGTTGTAACTTATAGCTAGCAAGCTACTTACCATCATGCCGGAAAAAACACACTGTGTTGTGACTGGATGCCATAGTGATAATTTAACATTACACTATTTCCTGAAGAATGAGGACATCCGTAAGCAGTGGCTGGTTTTCATTTCGGGTGGACAGGATCATAACACCCGTGTGCAGTGCACATTTAGAGCGAAGTTGCTTTATAAATTGGGGAGAACATTTGATGTGTCTTGCCAGGAAGCTAATCATGAAGATGGATGCTGAACCATCATTGACAGTGGATCAGTTTGTCTTGCAAGCACTGACCATAATGTAAGTATGAGTCTGACACTGGTGGCTGTAACTGTGGCTACTTTGACAGTATATTTTCTGCAACACAGCTGATTGTCACTAAATGGTTTTTGTTCTTCCATCCCTAAGCCCCCTACATTGAGTCTGAGAACTGACAGCAAACAGCTGATATGAAGGAATGTTGTCCACAAAAGGAGTTCTGGCAACCCCCGCAGCAGGAATGCCATGATACAAAATCAGCTTTCCCAAGATAAAGGGGCCTGTGAagacagaaaaaaagaaaagggGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCATGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGAAATGCTGTAAAGCCTGTGAAGACAGACCAAATAAGGGGGATATGCTGTGAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCCATGAAGACAGATCAAGTGAAGACAGACCAAAGAAGGGGGATATGCTGTGAAACCTGTGAAGACAGACCAAAGAAGGGGGGGTTATGCTGTGAAGCCTGTGAAGACAGACCCAACCAAAACTGCTACATAGACAGGCTCCTGGATCTCCTCTTCAGCAAGGTCACCCTTGATCCAGTGCCGTATGTGGGGAAGATGTGCGAGCTGTCCATCCCAGAACCCGTCTGCCCAGTGTGAGAGGCCTGACAAGGAGGAGACCATACCTGGTTTTGTCTCCAGCATCAATCTTCGGGGTGACTGAAGTCAAGTGGGTGACTGAAGCCTGCTTGATTGAAGCAGGTTACATGGTCCCCCTCCTCTCCCGATCCCGTCCCATCAATCTCTGTAGTTGGTTGCATTTCCCAAAGTCTAAGTAATTTATATGATATCACATTTTATTTTACATAGTTTTTTCTAACATTTGGACGGGAGATGAGAGTTACAAATTGTAAGACTCAATGGGGTCCTGCACACTGTAGGGCAGCAGGGTGCCTATATTGCGGTTTATGGctctatttgatttatttttttatgtcaAATGATGTCTCACCATTATTTCTTACCTTTATTTCTCATGAATGTCCATGTTGATCAATATTTCAGATATGCTTGCCTAATGTAAATTAACAAATAAATGTCTGA

Function

NR:

description
zinc finger MYM-type protein 4-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558572.2 False 2506 mRNA 0.52 10 51470090 51508651
XR_005035586.1 False 1220 mRNA 0.45 4 51503144 51507830
XR_005035585.1 False 1339 mRNA 0.46 5 51503144 51507874
TU1352615 True 2116 lncRNA 0.43 3 51503175 51505681

Neighbor

gene id symbol gene type direction distance location
LOC110486742 NA coding downstream 5272 51442887 ~ 51464818 (-)
LOC110486741 erf3b coding downstream 28384 51427685 ~ 51441706 (-)
LOC110486740 LOC106606777 coding downstream 45517 51422590 ~ 51424573 (-)
LOC110486738 LOC106606773 coding downstream 57673 51405257 ~ 51412417 (-)
LOC110486734 LOC106606824 coding downstream 140774 51324906 ~ 51329316 (-)
LOC118938316 NA coding upstream 10259 51518910 ~ 51522697 (-)
LOC118938317 NA coding upstream 17963 51526614 ~ 51530761 (-)
timm29 LOC106606779 coding upstream 51016 51559667 ~ 51562465 (-)
carm1 carm1 coding upstream 58309 51566960 ~ 51581205 (-)
LOC110486760 LOC101074561 coding upstream 73210 51581861 ~ 51585591 (-)
G1186113 NA non-coding downstream 91871 51377457 ~ 51378219 (-)
G1185369 NA non-coding downstream 151491 51318273 ~ 51318599 (-)
G1185355 NA non-coding downstream 174567 51295271 ~ 51295523 (-)
G1185353 NA non-coding downstream 177283 51292541 ~ 51292807 (-)
G1185348 NA non-coding downstream 179716 51289769 ~ 51290374 (-)
G1186175 NA non-coding upstream 24640 51533291 ~ 51533538 (-)
G1186182 NA non-coding upstream 32351 51541002 ~ 51541418 (-)
G1186183 NA non-coding upstream 35405 51544056 ~ 51544359 (-)
G1186189 NA non-coding upstream 44767 51553418 ~ 51553632 (-)
G1186075 NA other downstream 96136 51352309 ~ 51373954 (-)
G1186080 NA other downstream 146159 51321800 ~ 51323931 (-)
G1185046 NA other downstream 688232 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 712046 50732097 ~ 50824433 (-)
G1184986 NA other downstream 841551 50626647 ~ 50628539 (-)
G1186381 NA other upstream 416312 51924963 ~ 52030660 (-)
G1186216 NA other upstream 502039 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1150680 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 2098373 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 2297993 53806640 ~ 54049592 (-)
G1186153 NA non-coding downstream 15471 51487501 ~ 51487704 (-)
G1186150 NA non-coding downstream 18657 51484290 ~ 51484518 (-)
G1186154 NA other downstream 12934 51489777 ~ 51490241 (-)

Expression


Co-expression Network