LOC118938317


Basic Information

Item Value
gene id LOC118938317
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51526614 ~ 51530761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035588.1
CTGGCTAGATGCAGTGGCTGTTCCAGCCTGTGGACTCTTCCTCTAAATATTAAACAGATGCTTTAATCCAGAATTGACAGGCCAGGCCTGTATAGAGATTATAAAGTATAGAGGCTATATAATAGCGTACATTTTATTGTTAAAATATTAGGTTCAACTCACTTGCTGCAACCAATGTATATATAAATCATCGGCTGCGACCCGCAACATGCAGCAGAGAGACAAAAGGACGATGTTCATTTCAGAAGTCTCTATGATTGGTTGTTCGTGTTACCATTGGAAACAGTGAGAAGGAGGAAGTCAGTTTCTAATTTTCCTTAACCTTTTCCCTCACCTCGACATGGTAATGTTATGATTTTTTACAGACATGAGAATTTCACATCATTGTATCCGGTGCATACAGCTGACAAGAACAGACACATACTGAAGATATCCTAATATAACGTATTCATGGTGTGTTTGACAAAGGTGAACTACCTGATATAGTCTTACATGGCTAGGTGTGTTAAATTACACATCAAGTAGACTGGGGTTACACTAGCATGAGGCGTAATAGGTTTACCTTTATATAGTGGTCTATAGGGGCCATTTACAATGCAAAACATTTACAGAATGCTGTCTATGAAGGACTCATAAATTAtcagaaagagtcagagagagagagatagtcattTGTTTTCCAGAGAAAGTCATTAATTTGCTCCACCATTTTATGAAATGTTTCGAACAACTTTGGGCAGAAGTGTCTAGGAATGAGATTAGGAATAACCAAATATCTGACATCATGTTTTGTTTACAGGTACTGCACATTCTGATCTGACTCTGATTGGTCAACCATGAGTGACAGCAGGGAGGACCCTCCTCCTCAGACACAGGGTTCTGGAGGAGACAGAAAGGTACTGCACATTCTGATCTGACTCTGATTGGTCAACCATGAGTGACAGCAGGGAGGACCCTCCTCCTCAGACACAGGGTTCTGGAGGAGACAGAAAGCATCACACCCTTCTCTTCTTCCCCATccatcctttctcctcctccatccatctctcagcTTGACGTGCAGAGGGTGGAACCTGTAGTCGATGTTGAGGTTCAGACAGCAGGTGAAAGAATGCTGAGGGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035588.1 True 1125 mRNA 0.42 3 51526614 51530761

Neighbor

gene id symbol gene type direction distance location
LOC118938316 NA coding downstream 3917 51518910 ~ 51522697 (-)
LOC110486743 LOC106601710 coding downstream 17963 51470090 ~ 51508651 (-)
LOC110486742 NA coding downstream 61796 51442887 ~ 51464818 (-)
LOC110486741 erf3b coding downstream 84908 51427685 ~ 51441706 (-)
LOC110486740 LOC106606777 coding downstream 102041 51422590 ~ 51424573 (-)
timm29 LOC106606779 coding upstream 28906 51559667 ~ 51562465 (-)
carm1 carm1 coding upstream 36199 51566960 ~ 51581205 (-)
LOC110486760 LOC101074561 coding upstream 51100 51581861 ~ 51585591 (-)
LOC110486749 LOC106601716 coding upstream 61398 51592159 ~ 51607002 (-)
LOC118938556 NA coding upstream 570124 52100885 ~ 52101957 (-)
G1186153 NA non-coding downstream 38910 51487501 ~ 51487704 (-)
G1186150 NA non-coding downstream 42096 51484290 ~ 51484518 (-)
G1186113 NA non-coding downstream 148395 51377457 ~ 51378219 (-)
G1185369 NA non-coding downstream 208015 51318273 ~ 51318599 (-)
G1186175 NA non-coding upstream 2530 51533291 ~ 51533538 (-)
G1186182 NA non-coding upstream 10241 51541002 ~ 51541418 (-)
G1186183 NA non-coding upstream 13295 51544056 ~ 51544359 (-)
G1186189 NA non-coding upstream 22657 51553418 ~ 51553632 (-)
G1186154 NA other downstream 36373 51489777 ~ 51490241 (-)
G1186075 NA other downstream 152660 51352309 ~ 51373954 (-)
G1186080 NA other downstream 202683 51321800 ~ 51323931 (-)
G1185046 NA other downstream 744756 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 768570 50732097 ~ 50824433 (-)
G1186381 NA other upstream 394202 51924963 ~ 52030660 (-)
G1186216 NA other upstream 479929 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1128570 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 2076263 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 2275883 53806640 ~ 54049592 (-)

Expression


Co-expression Network