G1186224


Basic Information

Item Value
gene id G1186224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51631694 ~ 51649513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352772
ggAAAGCTTTTCAATACAGGGCAAATCCTTATTAACTAAGCCTGCCCCCTATAGTGTGAAATTGGAACTGAAGGTCACATCTCTGCTCTTCAGTTTCCATGTACTATAAAGTATGTCCCCAGAGAATAGGTTTTTGCACAGCTCTGGCGGTGGTTTGTATCACTGTGGGGGTAGCGAGCACAGTAATACACAGCTGTGTCTTCAGTCTGGAAATTCTTCCCTTGTAGAAACACTGTGCTGCTGGAGGAGTCAACAGTGAAGCTGATTTTGCTCTTTAATGAGTCTGTTgtgccactgctactactactacacaggtATCCAATCCACTCCATAGCTTTTCCTTCAGAATGGCGAATCCAGTTGGTGCAAGTGCTAGTAACAGAATAACCAGCAACCTTACAGGGGATGGTGACAGACTCTCCTGGACTTACAACCATAGAACCAGGTTGGGTTAATGTGATATCACAGTAAATACCTGAGGCAGCTGCCAGCAGCAGCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352772 True 500 lncRNA 0.46 2 51631694 51649513

Neighbor

gene id symbol gene type direction distance location
LOC110486749 LOC106601716 coding downstream 24692 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 46103 51581861 ~ 51585591 (-)
carm1 carm1 coding downstream 50489 51566960 ~ 51581205 (-)
timm29 LOC106606779 coding downstream 69229 51559667 ~ 51562465 (-)
LOC118938317 NA coding downstream 100933 51526614 ~ 51530761 (-)
LOC118938556 NA coding upstream 451372 52100885 ~ 52101957 (-)
LOC110485216 NA coding upstream 506127 52155640 ~ 52331576 (-)
LOC110538721 NA coding upstream 537044 52186557 ~ 52189703 (-)
LOC110486769 gtf2f1 coding upstream 765806 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 1080865 52730378 ~ 52741555 (-)
G1186085 NA non-coding downstream 3261 51627731 ~ 51628433 (-)
G1186214 NA non-coding downstream 5253 51625662 ~ 51626441 (-)
G1186189 NA non-coding downstream 78062 51553418 ~ 51553632 (-)
G1186183 NA non-coding downstream 87335 51544056 ~ 51544359 (-)
G1186218 NA non-coding upstream 27505 51677018 ~ 52085973 (-)
G1186274 NA non-coding upstream 82423 51731936 ~ 51736473 (-)
G1186283 NA non-coding upstream 92951 51742464 ~ 51814468 (-)
G1186311 LOC106606764 non-coding upstream 143392 51792905 ~ 51799214 (-)
G1186313 NA non-coding upstream 146852 51796365 ~ 51802602 (-)
G1186154 NA other downstream 141453 51489777 ~ 51490241 (-)
G1186075 NA other downstream 257740 51352309 ~ 51373954 (-)
G1186080 NA other downstream 307763 51321800 ~ 51323931 (-)
G1185046 NA other downstream 849836 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 873650 50732097 ~ 50824433 (-)
G1186381 NA other upstream 275450 51924963 ~ 52030660 (-)
G1186216 NA other upstream 361177 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1009818 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1957511 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 2157131 53806640 ~ 54049592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026552 ighv8-2 coding NC_007114.7 CM002887.2 34072012 ~ 34072446 (-)
grasscarp (Ctenopharyngodon idella) G403321 NA non-coding CI01000288 null 40163 ~ 70183 (-)
mexican tetra (Astyanax mexicanus) LOC111190666 NA coding NW_019172687.1 APWO02002285.1 22121 ~ 23352 (-)