G1190951


Basic Information

Item Value
gene id G1190951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58345182 ~ 58347543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1358503
TTAACTACAAACATGACACTTTATTGAACGTTTGCCTGAATGGGTTACAGAATCTGAGAGTTAACTGTTTGTTCTTCTAATCAGGGGAAACATAGTTCTATACATAGGCATGCTGCGTCACTGCACAGTCACATCTGTGAAAACCAATACCACCCCCGTCGGATGCCCCGAATGGAACAGTGTGAAGGCAAGCCAATTCAGGAGTGGACAAGTCAAGGACATGTTAAACCCAGACAGGAAGGGTGTTTACTAATGGGGCTGCCCAGGGGGGGGAACGAACTTGACGGAACAGTAGTATGTGTAAAATCTCACCCTGATTTGTTCATAGCATCTTTATAAACACAGACATGAAGATCTAGATCTTTAGTAATTTCATAGAGATTTCCTTCCAAACTGGCAGGGGGTACAGTATTTGGGTAATCTGATGATGTCACAAGCAACTCCAACAGGTTATTTGTGGGCCTTTTGGCCTGTTTTGGACCCTATCCCCTGACACCCCCTACAGTTCTCTACCGTGTCTCTTATACAACCGTCCTTATCTCTCTCTCGTGTTCAAGAAAGCACAGACATAAAACTGTCATCTGATATACGCTAAAAAATATGATTTTTGTCACATGACCTTCACATAAATATAATTAGTATTTAACAGTACGTCTGAGAGAAAGGTACTTACATGTATATAAATGGTGATGAGCATGCACAGATAGGTAGTCATCGACGAGTGCAAAAATCTACTAAGTAACAGTAACTTTGAACTTTTTTTTGTACTCCACATTGAGTGAAAACATCACAAGATTGAAGAATTGAAACCCGCCCCTCTTCGGTTCTGGGAGGGTGAATCTCCACAGTTGTTCCTTGCTTGTTGTCCACCCACAGCCCTGAGGACAGGAcccgtattcacaaagcatcttagggtaggagtgctgatctaggatcaggtctctcctgtccatataatcttattcagtATTATCTAAAAGGCAGAACTGATCCTATGCCAGCACTCTGAGGCCTGTAGCCTGTCCCACTGGAGCCTGGCACAGTGCAGTCAGAACGGGCCTGGGTCTGCCCCAGAGAGGCCCGAACAAAGCCTGCCTTGGCATGCAGCGCTGTGGGTTAGGGCCATATACAGAATAACCaatctagtaattatatttctatggttagGCCTACATGTAGTGCCTGCCTACCTacccaccagtggagAGACATCCTGTAGCCCAATGACCCAGGATTACACCAAAAGACCCTTCGGGTCATAGGTCATAGCTCAGAGGTAATTCTACCATCACTGCTCTACTCTCTGCATCACTCTATTATATCACAGACACAGTAGTCATTATCTATGAAGTGCAAAACAACAAGTATTTTTGATTAGCATTATGCAACGAATGTCATATCTCTGAAAAATGTATTACGTTTCCCCATATAATAAAACTGTTACAGCAGACAGTGAAACATGTTTTGACAGAGGATACTGTATAGGAGATTTCCAAAGTTGTCGCAAGTAGGAAAAACCACACCCAAAGTTAGCTAGATGCCTCACAGACAGACCGTTGTGTTTTTCAACgttaataatcaaatcaaatgaaattaaAAACATGGCTAGCATCTTGACATATGTTTTAAAATACTAGTTAAAAAGAACAAAGAAAGACACCAGcaagagaaaaataaaaaacgaaaaaataacaataaaatcaATCCAGTCACAAATCCGATAAATTAAAATCTAATCATTATTACACTAGTCAGATGCCCAGTGGTTTATATAATATATTAGGCTGGTGTCTAAAAAAAATCATCCTCTACAGTCAAAAAGAAATCTAACCAAAACAAGCTATACAGCACTACTATATACAGTCTCTCTCTCGTAAGGGGAGAGCTGGTAAGTATgtaagggagagggagactgaaaACAGAGACCTTGCTGTAACACAAGAGTCTTTCTTGGCACAGAAAACGGTAGTTACCAGCACAGAGGgacgagaggagggagagaggcttcTCAGATAAGGAGGACAGCACAGAGCAGTGCTGCCTtccccacagacagacacacacacacactggggaaaGAGCCATTTTGTCACACAGATACGTTTGCTGATTGGGGGGGAAGTCAAAGCGATGTAGCCGTCACATAGACCATTGTAACCCCTCCCCTCTGGACTggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1358503 True 2178 lncRNA 0.42 2 58345182 58347543

Neighbor

gene id symbol gene type direction distance location
LOC110486937 LOC106606542 coding downstream 70893 58242507 ~ 58274289 (-)
LOC118938643 NA coding downstream 347734 57995613 ~ 57997448 (-)
LOC118938562 NA coding downstream 350140 57994889 ~ 57995042 (-)
LOC118938645 NA coding downstream 350668 57989092 ~ 57994514 (-)
LOC118938642 NA coding downstream 362150 57981197 ~ 58002323 (-)
iqck LOC106606545 coding upstream 5184 58352727 ~ 58371333 (-)
LOC110486946 LOC106601863 coding upstream 25126 58372669 ~ 58426053 (-)
LOC110538558 LOC106606549 coding upstream 106800 58454343 ~ 58499967 (-)
LOC110538556 LOC106606549 coding upstream 157207 58504750 ~ 58507829 (-)
LOC110514412 NA coding upstream 214137 58561680 ~ 58588526 (-)
G1190920 NA non-coding downstream 31059 58274474 ~ 58314123 (-)
G1190856 NA non-coding downstream 102907 58241805 ~ 58242275 (-)
G1190854 NA non-coding downstream 106472 58236746 ~ 58238710 (-)
G1190851 NA non-coding downstream 112747 58232160 ~ 58232435 (-)
G1190841 NA non-coding downstream 125397 58219570 ~ 58219785 (-)
G1190955 NA non-coding upstream 3056 58350599 ~ 58351296 (-)
G1190956 NA non-coding upstream 6799 58354342 ~ 58355010 (-)
G1190964 NA non-coding upstream 24042 58371585 ~ 58371849 (-)
G1191169 NA non-coding upstream 38947 58386490 ~ 58387386 (-)
G1190628 NA other downstream 351158 57964952 ~ 57994099 (-)
LOC110486915 LOC106606556 other downstream 638392 57698059 ~ 57706813 (-)
G1190405 NA other downstream 846027 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 1255267 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 1259711 57054453 ~ 57085521 (-)
LOC110486955 NA other upstream 249233 58588778 ~ 58603975 (-)
G1191298 LOC106606554 other upstream 412180 58759723 ~ 58762086 (-)
G1191335 NA other upstream 520520 58868063 ~ 58868971 (-)
G1192082 NA other upstream 558610 58906153 ~ 58909232 (-)

Expression


Co-expression Network