XLOC_003088 (tacr1b)


Basic Information

Item Value
gene id XLOC_003088
gene name tacr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44769050 ~ 44788554 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005651
CACGACAACTGTGCGCGCGTTTGGAGAGGCGCGCTCGCGACTCAGCGGATCCTCAGCGCATTTCTTCAACTCATTTTTGGAGGCTCTATAATTCACAAAACAAACCTCAAAACAACAAAAACGCCAACTTCCCCTTGTTAAAATGCCTGTTCTCTGATATATTAGTCCACCATGGATCCGCTGTACATCACTTCGCCAAACTCGAGCGCCGATAACGGGAGCGCCGGTTCTCCGGTAAACGACACGGAGGTGTTCGGGAACCAGTTCGTGCAGCCGGTCTGGCAGATCGTACTATGGGCTATCGCGTACTGCACTATAGTTCTGGTGTCGGTAGTGGGAAATATCACGGTGATCTGGATCATTTTAGCGCATAAGCGCATGAGGACGGTCACCAACTACTTTCTGGTGAATCTGGCGTTCGCGGAGGCGTCCATGTCCGCCTTTAACACCGTCATTAACTTTATTTACGCGGTGCACAATGAGTGGTACTTCGGGCTGGTTTACTGCAGGTTTCATAACTTCTTCCCGATTGCAGCTGTCTTCGCCAGTATTTACTCTATGACCGCTATAGCTCTGGACAGGTATATGGCGATCATCCACCCGCTCCAGCAGCGTCTGTCGTCCGCTGAGACTAAACTGGTGGTGTGTGTGATCTGGGCGCTGGCGCTAATGCTGGCGTTCCCTCAGTATTATTTCTCCAGCACGGCTCAGCTGCCGGGACGCGTCGTGTGCTACATTAACTGGCCGGAATACAGCATGTGGGACTTCCAAAAGACGTATTACGTCTGTGTGGTTGTGCTCATCTATTTTCTGCCTCTGCTGGTCATGGGTTGTGCTTACCTGGTGGTGGGATGTTTTCTGTGGGCGAGCGAGATTCCTGGAGACTCTTCAGATCGGTATCGAGAGCAGCTGATCGCCAAACGCAAGGTGGTGAAGATGATGATCGTCGTAGTGTGCACCTTCGCCGTCTGCTGGCTCCCCTATCATGTCTACTTCATAGTGCACCAGTTTCTTCCACACTTGTTTGAGGAACGCTACATCCAGCAGGTCTACTTGGGGATAATGTGGCTTGCTATGAGCTCCACCATGTACAATCCCATCATCTACTGTCTTCTCAACGACAGGTTTCGAGCGGGATTCCAGCAGGCGTTTTCCTGGTGTCCGTGCGTCCCTCAAGGCTCATATGAAGGTCTGGAGCTCAAGTCTACTCGCTATCTTCAGACGCAGGCCAGCATCTTCAGGGCCAGCCGAATGGAAACCACAGTATCCACAGTGATGCCAACTGGAGACGGAGAACTTCCAGAGAATCCAAACCGAAGCTCCGTAGATCTCACGTCCAATGGCTCTTCTCGAAGTGCCTCAAAAACCGTCTCCGAGTCCTCCTTCTATTCCAGTAACAACGTAGCATAGAAAGAAACGTAGGAAGTATTTGTAGTattattttagatgttagttttagTCTTTGTAGTTTCAGTC

Function

symbol description
tacr1b Predicted to enable substance P receptor activity. Acts upstream of or within cellular response to cocaine. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in central nervous system and somite. Human ortholog(s) of this gene implicated in exercise-induced bronchoconstriction. Orthologous to human TACR1 (tachykinin receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071314 cellular response to cocaine biological_process
GO:1902093 positive regulation of flagellated sperm motility biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0097225 sperm midpiece cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016496 substance P receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-17 Predicted to enable substance P receptor activity. Acts upstream of or within cellular response to cocaine. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in central nervous system and somite. Human ortholog(s) of this gene implicated in exercise-induced bronchoconstriction. Orthologous to human TACR1 (tachykinin receptor 1).

Ensembl:

ensembl_id ENSDARG00000102900

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005651 True 1476 mRNA 0.51 5 44769050 44788554

Neighbor

gene id symbol gene type direction distance location
XLOC_003087 npm2b coding downstream 208748 44552548 ~ 44560302 (-)
XLOC_003086 CABZ01072083.2 coding downstream 251864 44513231 ~ 44517186 (-)
XLOC_003085 DUSP26 coding downstream 260801 44503819 ~ 44508249 (-)
XLOC_003084 CABZ01072084.1 coding downstream 267331 44493919 ~ 44501719 (-)
XLOC_003083 hip1ra coding downstream 286139 44473851 ~ 44482911 (-)
XLOC_003089 tuba7l coding upstream 128797 44917351 ~ 44924289 (-)
XLOC_003090 NA coding upstream 185682 44974236 ~ 44976643 (-)
XLOC_003091 purbb coding upstream 190979 44979533 ~ 44981295 (-)
XLOC_003092 ved coding upstream 208508 44997062 ~ 45002196 (-)
XLOC_003093 polm coding upstream 226671 45015225 ~ 45029041 (-)
XLOC_003080 NA non-coding downstream 381248 44380918 ~ 44387802 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 493165 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 non-coding downstream 515946 44242236 ~ 44253104 (-)
XLOC_003068 CT583727.1 non-coding downstream 936382 43831882 ~ 43832668 (-)
XLOC_003094 NA non-coding upstream 258675 45047229 ~ 45051538 (-)
XLOC_003097 NA non-coding upstream 567070 45355624 ~ 45357482 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_01921098_01929676 TACR1B coding CI01000158 null 1920592 ~ 1929676 (-)