XLOC_003112


Basic Information

Item Value
gene id XLOC_003112
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 543348 ~ 544194 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008508
cacacacacactcATCATACAGATGCTGGAAGTGCTGCTGCTTGTccatgtgtagtgtgtgtgtttgcatgtgcatGTTTAGAGTGTGTGTTCATCAATGCGGCACTGCACTGCTGGTGTGTGAGGCTCTGACAGCTGCATGAagagtctgagtgtgtgtgtgtgtgtgtgtgtgttcatctatGCGGCGCGTCTGCAGCTCCTGACAGCTGcatgaagagtgtgtgtgttcagtgtgtgttcatCAATGCGGTGCGTCTGAGGCTCCTGACAGCTGCATGAAGAGTTCCCCCAGGTCATTGACCTCGTCCTCCAGCTGCGGGACACTCCGGTGCTCGCGCTCCTCGATGAAGTCCCACAGACGCACCGAGTTCTGGaactacacacataca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008508 True 392 lncRNA 0.54 2 543348 544194

Neighbor

gene id symbol gene type direction distance location
XLOC_003111 raf1b coding upstream 3096 506465 ~ 540252 (+)
XLOC_003109 NA coding upstream 38519 474380 ~ 504829 (+)
XLOC_003110 NA coding upstream 48815 489935 ~ 494533 (+)
XLOC_003108 rab43 coding upstream 93249 440305 ~ 450099 (+)
XLOC_003107 CR855375.1 coding upstream 171908 371322 ~ 371440 (+)
XLOC_003113 mkrn2os.1 coding downstream 31471 575665 ~ 580833 (+)
XLOC_003114 mkrn2os.2 coding downstream 38948 583142 ~ 589128 (+)
XLOC_003115 timp4.1 coding downstream 147540 691734 ~ 701305 (+)
XLOC_003116 timp4.2 coding downstream 161533 705727 ~ 711032 (+)
XLOC_003117 timp4.3 coding downstream 170192 714386 ~ 718748 (+)
XLOC_003250 BX324177.11 misc downstream 10801609 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10828692 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10842168 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10873839 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10885199 11429393 ~ 11429689 (+)
XLOC_003104 NA non-coding upstream 244249 298450 ~ 299099 (+)
XLOC_003101 NA non-coding upstream 376524 96979 ~ 166824 (+)
XLOC_003118 FQ311892.1 non-coding downstream 186613 730807 ~ 730923 (+)
XLOC_003126 AL935272.1 non-coding downstream 1001923 1546117 ~ 1546231 (+)
XLOC_003132 NA non-coding downstream 1391490 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 1407437 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 1646427 2190621 ~ 2190730 (+)

Expression


Co-expression Network