XLOC_031730 (SMARCA4)


Basic Information

Item Value
gene id XLOC_031730
gene name SMARCA4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 83873 ~ 98930 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062189
ATGGGCCCCAGCCCGGGACCGGCTCCCGCTCCGGGACACTCCTTCCCCCAGCAGACCCCCGTGGCATACAGCCAGGAGAGCCTGCACCCCATGCACAAGccggTGGAGGAGGTGCTCTCTGAGGACGCTCACTTCAGCCAAATGAAGGTGGTGCCCATGAGGGGGATGACCCGTCCTGGGAGCCCAATGGACCAGCACTCACAAgGGTACCCGTCTCCACTTGGTGCATCTGAGCATGTGTCCAGCCCTGTGTCCACCAGCGGGCCTCCTTCAGGTCCACTTCTGTCCACCTCCGGCTCCAGCTCTGCATCTCTGGAAGGTTCAGATGGGCAGGCGCTGCCACTGACCCGCCCGGGGGCCCAAACTGTGGCTCCTGGCTCTGGCAGTGGCCCCCCAGGCTCCTCCAACACACCCACACCCTTCAACCAGAGCCAGCTGCACCAGCTGCGTGCCCAGATCATGGCCTACAAAATGCTGGCACGTGGGCAACCGCTGCCGGACCACCTGCAGATGGCAGTGCAGGGCAAGAGACCCATGCCAGGGATGCCACAGGGGCCGTCACTGCCCACACTGCCCCctgctggaggaggaggaggagccggcttCAGCAGAGCACATGGAATGGTGGGACCCAACATGCCTCCGCCGGGGCCGTCTGGAGTCCAGGCTGGTGTTCAGGGCCAGAACCTCAACGGACCTCCCAAACCCTGGCCTGAAGGTCCTCTGGTGAACGCAGCAACCCCGTCCAATGCCCCTCAGAAGCTGATGCCGCCACAGCCCACTGGACGCCCCTCACCTGCACCACCTGCTGTGCCACCCGCTGCCTCACCCGTCATGCCACCGCAAACTCAATCTCCAGGAAACCTCGCCCACCCGTCCCAGCCCACCACCATGGTGCCGCTGCATCAAAAGCAGAACCGCCTCACACCGGTGCAAAAGCCCTGCGGTCTGGATCCAGTGGAGATCCTGCAGGAGAGGGAGTACAGGCTCGAGGCTCGAATCGCGCACCGGATTCAGGAGCTGGAGAACCTGCCCGGGTCTCTGGCTGGAGATCTGCGCACCAAAGCCACCATAGAACTCAAAGCCCTTCGGCTGCTCAACTTCCAGAGACAGCTGCGGCAGGAGGTGGTGGTCTGCATGCGGAGGGACACAGCTCTGGAGACGTCTCTGGACGCTAAAGCCTACAAGCGCAGCAAGCGTCAGTCGCTGAGAGAGGCCAGAATCACAGAGAAGCTGGAGAAGCAGCAGAAGATCGAGCAGGAGCGCAAACGCAGGCAGAAGCACCAGGAGTATCTCAACAGCATCCTGCAGCACGCCAAAGACTTCAAGGAGTACCACCGCTCCATCACGGCCAAGATGCAGAAGCTGACCAAAGCGGTGGCCACGTACCACGCTAACACTGAGCGCGAGCAGAAGAAGGAGAACGAGCGCATCGAGAAGGAGCGCATGCGGCGCCTGATGGCTGAGGATGAGGAGGGTTACAGAAAGCTAATCGACCAGAAGAAGGACAAGCGTCTGGCGTATCTGCTGCAGCAGACAGATGAGTATGTGGCCAACCTGACGGAGCTGGTGCGCGCTCATAAAGCTGTTCAGGCCCtgaaagagaagaagaagaaaaagaagaagaagaagctggAGAATGCTGAGGGGCAGACCGGAGCTCTGGGGCCAGATGGAGagCCCCTGGATGAGACGAGTCAGATGAGTGATCTTCCAGTGAAGGTGATTCATGTGGACAGTGGGAAGATTCTGACAGGTGTGGATGCTCCTAAAGCTGGACAGCTGGACACCTGGCTGGAGATGAACCCTGGGTATGAGGTCGCTCCGCGGTCTGACAGTGAGGACTCCGGgtcagaggaggaggaggaagaggaagaggaacCTCCTCCACTGCTTCCAACTCAGACACCTGCAGAAGAGAAGAAGAAGATCCCTGACCCGGACAGTGAGGACGTGTCAGAGGTGGACGCGCGGCACATCATTGAgcatgCTAAGCAGGATGTGGATGATGAATACGGCAGCGCTGTGATCATGCGTGGTTTACAGTCGTATTACGCTGTAGCTCACGCCGTCACTGAGCGCGTGGACAAACAGTCGTCACTGCTGATCAACGGCCAACTCAAGCAGTACCAGatcaaGGGTTTGGAGTGGCTGGTGTCTCTGTATAATAATAACCTGAACGGGATCCTGGCAGACGAGATGGGCTTGGGCAAAACCATCCAGACCATCGCCCTGATCACGTACCTGATGGAGTACAAGCGTCTGAACGGGCCGTACCTCATCATCGTGCCGCTCTCAACTCTGTCCAACTGGGTCTATGAGTTTGACAAATGGGCTCCGTCTGTGGTGAAGGTCTCCTATAAGGGGTCTCCGGCCGCCAGAAGAGCCTTCGTCCCTCAGCTGCGCAGCGGCAAGTTCAACGTTCTGCTGACCACCTATGAGTACATCATCAAAGACAAGCAGATCCTGgccaagATCCGCTGGAAGTACATGATAGTGGATGAAGGGCACCGCATGAAGAACCACCACTGCAAGCTGACGCAGGTGTTGAACACACACTACCTGGCCCCGCGGCGGGTGCTGCTGACCGGGACGCCGCTGCAGAACAAGCTGCCCGAGCTCTGGGCGCTGCTCAACTTCCTGCTGCCCACCATCTTCAAGAGCTGCAGCACCTTCGAGCAGTGGTTCAACGCCCCCTTCGCCATGACCGGCGAGAAGGTGGACCTGAATGAAGAGGAGACCATCCTGATCATCCGGCGTCTGCATAAAGTTCTCCGCCCCTTCCTGTTACGCAGACTCAAGAAGGAAGTGGAGGCGCAACTGCCGGAGAAGGTGGAGTATGTCATCAAGTGTGATATGTCGGCTCTTCAGAGGGTTCTGTACCGACACATGCAGGCCAAAGGGGTTCTGCTGACCGACGGCTCCGAGAAGGATAAGAAAggtaAAGGCGGCACTAAGACTCTAATGAACACTATAATGCAGCTGAGGAAGATCTGTAATCACCCCTACATGTTCCAGCAGATTGAGGAGACATTCTCAGAGCATCTGGGCTTCTCCGGCGGAATCGTTCAAGGGCTGGATTTATACCGAGCCTCGGGGAAGTTCGAGGTGCTGGACCGCATTCTGCCAAAACTACGAGCCACAAACCACAAAGTGCTGCTCTTCTGCCAGATGACGTCTCTGATGACCATCATGGAGGATTACTTCGCCTACCGCAACTTTAAGTATCTGCGTCTGGACGgcACCACGAAGGCTGAGGACCGGGGGATGCTGCTGAAGACCTTCAATGATCCGGCCTCTCAGTACTTCATCTTCCTGCTGAGCACCAGAGCGGGCGGCCTGGGCCTGAACCTGCAGAGCGCCGACACGGTCATCATCTTCGACAGCGACTGGAACCCTCACCAGGACCTCCAGGCGCAGGACCGAGCACACCGCATCGGGCAGCTGAATGAGGTGCGGGTTCTGCGTCTCTGCACCGTCAACAGTGTGGAGGAAAAGATTCTGGCGGCCGCAAAATACAAGCTGAACGTGGACCAGAAGGTGATCCAGGCCGGGATGTTCGACCAGAAGTCGTCGAGTCATGAGCGGCGAGCGTTTCTGCAGGCAATCCTGGAGCACGAGGAGCAAGACGAGGAGGAGGACGAGGTGCCGGATGATGAGACGGTTAATCAGATGATCGCCAGGAGTGAAGACGAGTTCGACCAGTTCATGCGGATGGATCTGGACCGCCGGCGTGAGGAGGCGCGGAACCCGAAGCGTAAGCCGCGGCTGATGGAGGAGGACGAGCTGCCCACCTGGATCATGAAGGATGACGCAGAGGTGGAGCGACTCACctgtgaggaggaggaggagaagatgtTCGGCCGCGGCTCCCGCCAGAGGAAGGAGGTGGACTACAGCGACTCACTGACCGAGAAACAGTGGCtgaagGCTATAGAGGACGGTACGCTGGAGGAGATAGAGGAGGAAGTGCGGCACAGGAAGTCAGCTCGTAAGCGTCGGCGGGATCGTGATCGAGATCCAGACTCGGTCCCATCCACATCTGCACGCGCCGGCGGCCGAGAGCGAGACGACGACAGCAAACGGCAGAAGAAGCGCGGTCGACCACCGACGGAGAAACTCTCGCCAAACCCGCCGGCGCTCACCAAGAAGATGAAGAAGATCGTGGATGCAGTCATCAAATACAAGGAGAATAACGGCCGTCAGCTGAGCGAGGTCTTCATCCAGCTGCCGTCCCGGAAGGAGCTTCCTGAATATTATGAGCTGATCCGCAAACCTGTGGACTTCAGGAAGATCAAGGAGCGGATTCGCAGCCATCGCTACCGCAGCCTCAATGACCTGGAGAGAGACGTGATGCTGCTGTGCCAGAACGCACAAACCTTCAACCTGGAGGGCTCACtgatctaTGAGGACTCTATCGTTCTGCAGTCGGTTTTCACCAGCCTGCGTCAGAAGATCGAGAGAGAAGAAGAGAGCGATGGAGAGGAGAGTGAGGAAGACGAGGAGGACGAAGGCTCTGATTCAGAGAGTCAGTCTAACACACACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGAGCAAGTACAGTAGACCTCGTAGCGTAGAAGCGGactgctaa

Function

symbol description
smarca4 Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062189 True 4695 mRNA 0.57 30 83873 98930

Neighbor

gene id symbol gene type direction distance location
XLOC_031729 crygm4 coding upstream 10877 72040 ~ 72996 (+)
XLOC_031728 sowahcb coding upstream 13969 68220 ~ 69904 (+)
XLOC_031727 mbd5 coding upstream 23671 48862 ~ 60202 (+)
XLOC_031726 MARF1 coding upstream 40814 31684 ~ 43059 (+)
XLOC_031725 CZQB01141835.1 coding upstream 53876 28203 ~ 29997 (+)
XLOC_031731 ldlrb coding downstream 3576 102506 ~ 109626 (+)
XLOC_031732 ap1m2 coding downstream 13649 112579 ~ 119859 (+)
XLOC_031733 cdkn2d coding downstream 21251 120181 ~ 126359 (+)
XLOC_031734 fdx2 coding downstream 50475 149405 ~ 152955 (+)
XLOC_031735 zglp1 coding downstream 54216 153146 ~ 158614 (+)
XLOC_031744 NA non-coding downstream 346703 445633 ~ 453037 (+)
XLOC_031750 NA non-coding downstream 860327 959257 ~ 960829 (+)
XLOC_031751 NA non-coding downstream 965008 1063938 ~ 1079773 (+)
XLOC_031752 NA non-coding downstream 1186535 1285465 ~ 1285894 (+)
XLOC_031753 NA non-coding downstream 1270120 1369050 ~ 1369364 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000130_00707077_00734081 SMARCA4A, SMARCA4 coding CI01000130 null 705829 ~ 734098 (+)
bowfin (Amia calva) AMCG00010145 NA coding CM030129.1 CM030129.1 16420684 ~ 16454456 (+)