XLOC_031727 (mbd5)


Basic Information

Item Value
gene id XLOC_031727
gene name mbd5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48862 ~ 60202 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062186
CGCAGAGGAGCAGCGGATGTGTTGATGCCTTCAgtcgttttgtttttattcttaaagGCCCAGAGTCGCTGTGAAATAAACCCGCGCGGACTCTTCCTCCGTTATTGTCCTCCGAGGAGCTTCCAGCACCGGGAATGCGGCGGTTGGCGGCTGTTATGAGGTAGATCGAGCCGCTGCTGCTGCGCTTCGGCCGCGGCGACACATTAGAGAGTGAATCCGCTGCAGGAGCGCTTCCGGCCCGCAGGAGAGCAGGAGCCATGGGTGTGCGAGAGCGGCCCCTGAGTGGCCCTTGAGTGCCGCAGACGCGTGTCCTGACCTCACTTCTTCTTCTTCAGTCTCCACTCTACTTCTTTCGGACTCTTTCTCATGGCTCCGGCCGGCCGGACTGCAGCGGCGGCGGGGTCTGTGTCTGCATGCGGCGCTGCGCTGGAGACGCCGTGCCGTCTGTGACTCCGCCCCTGAGCTGGACTTCCTCTTCTGAGCGTCAGGATGCGACGCGGCGCCGACACGCAGACGAGCGCCTGATCTGCAGGAGTTTAGCACTGGACCATAAACATGAATGGTGGAAAAGAGCGGGAGGGTACCTTCGCCCAGGTGCCCATCGGCTGGCAGAGGAAGCTGGAGGCCTCCGGTGTCCTGTACATCAGccccAGCGGATCAGTGCTGTCCTGTCTCGAGCAGGTCAAGTCTTACCTGCTGACCGATGGCACCTGTAAATGTGGTCTGGAATGTCCACTCATCCTCCCGAAGGTTTTTAACTTTGACCCTGGAGCGGCGGTGAAGCAGCGGACAGCAGAGGACGTGAAGGCTGACGAGGACGTGACGAAGCTCTGCATCCACAAGCGGAAGCTGATCGCGGTGGCGGCGCTGCATAAGAGCATGGAGCTGCAGCCGCCGGCGCTCACGCTCACCAGCCCCGGAGGAGGCACCAGTGTGAGCTCCATGTCTGCCGCTCCGCCTCGAGCAATAAGAAATAAGACCCACGAGAGCCAGCCGGAGTGCAGGAACCCCTTCAAGACGATGATGGCGGCTGGGCAGCGGCACTTCTCTCCGGACCTGTGCCCGCAGCAGCAGCAGGACGGGTTCCCTTCATACCCGCGGCAGAGGCTGAGTGAGCCCGGGCACAGGTCTCCATACCGCAGTGGGCACAGTAGCATGCTGAGCCCTCCGGTGCAGCCCTTCGGGGACAGTTCGGTTTCTCCCAGGACGGATGCTCTCGGCAGTCCTGACGGGGTTCTCCGTGGCACGGCCTGTGGGTTTCAGGGCACCGGCAGCCCTGGAGCTGTCCACAGCAGCAGCCGCGTCCCTCTGTCGTCCCCGGGTGTCCTGGCACATGGTTCACCCGTTGCCCCATCCTCCTGTGTCATGGCGGGCAGGACTAACATGCCTCTGTCGCCCCCTGTGCCCAACAAGAGCCCCGTCATGAAAAAACCCCTGTGCAACTATCCGCCCGGCATGGACTCCAGCAGAGGTGTGTTTCACCATAAGGCCCTGTCTGTGTCTGCGCCCACCCTGCCGCCGCCCTGCGCCCTGCAGAATAAACCGCTGAGCTCTGAAAAAGACCCACTCGGCATCCTGGACCCCATTCCCAGTAAACCCACCCCATCCCCTTTCCAGTCCAGCGCCCACTCTCAGGTACCAATGATGAATGTAAACATCCCGCCCGCCATCGTCCCACTGCCTAGTAACCTGCCCTTGCCCACGGTGAAGCCGGGCCCGGTGGGACACATGCAGAGGGCACCGCACGCCACGTCCATATCCCCGTCTCCCGTCACGTCCCCTGTGCACATGTCTGTGCCCGCGCTGGGTCGTGTGGAAGCATCTCCTCAGCGCTCCCGGTCCTCGTCCACCTCCTCGGAGCAGGGCAGCTTCGCCGTGCCCCCATGTGGCAGCATGAAGGTGCCGCCGCGCTCGCCCCGCTCTGCCATCAGCTCTCCGCGCCCTGCTCTGCCCTCCAGCCCGTCTGCCAAGCCGGAAGCTCTTCATTCGTACAAAGATGTGCCCGCCCAGCTGCTGGCAGGGATGAGTGGCATGAGCGGTCAGCACAACCCCATGTACCCGCCTGCCCCAGCGGGTGCTGGGCCGCAGAAGGAGCACCCAGGTCTGCTGGGGATGCCACTGAACCAGATCCTTAACCAACACAACGCTGCCTCTTTCCCTGCCAGCAGCCTCCTCTCAGCTGCCGCCAAAGCACAGCTAGCAAATCAAAACAAGCTAGGCAGTGGTGGTGGCGCGGTGGGCACGGGGGCGTCCGCTGGGCTCTCCTGCCCGCTCACTACACCGGACCCCAGCAGACCGACGGAGGGCCACGCTGCGCTGAACCCCATGCTGCCGCCCAACCCCGCCATGATGATGCCCAGCGGCGAAGCTCAGAGCGGGCGCGCTGCCCTCCGGGACAAACTCATGGCACAGCAGCGTGACCCCATGCGCAAGAGGAAGCATCCTGCAAGCGTTGCCCACCACGAGAACAGTTTTTTCAACATGGCTGGCATAAGGACACCGTGCCCGCCGGCCGAGCAGATGAGGAAAGCTGCCCGCCTGCCCTCCAACACGTCTATGGCGCAGCTGCTGCAGTCTCTGAGTAACCACAGCTCCCACAGGGGCAGGAGTCCAGCCCTCGCCAGCCCTGGGCGGGCACACTTTGGGGAGGGGGCACAGGTACAGCAGCGGGGACATGGGCAGCCCGACTCTATGCACTGCCCTGCCGTGGAGCCCCAAAGCCACTACTCTGGCATGATGAACCAGATGCAGCCCACGGCCATGGGCAACTGCGCACCCGTGAACCACAGTGGTGCAGTTCCTCTGGCCAACCACATGATGGCGCACACAGGCACTCACTTTCAGCAGCACGTCCAGCCTAATGCCAACTGCATTCTGCCCGGCGGAGAGTCCTGCTGCCCGCAGCCCATGGCAGATGCAGGTAAAGACCCCTGATGCTGTTTGGATGAGGTATTTCACTGATGtctgaaatgttttagctgtgtTTGCTCCTCATGATCAGCAGCTCTGTGTGTTTAATAACACATGTGCTCTGCTGGGGTCTCGGTAAACAAAACANGTTCGTTTCCTTCACTGACGAGCTTTAAAACTGCAGCACAAACCTTTACAGGCAGCCCGTCAAAATAAAGGCTGGCTGCTTTTACTTTGATTAACAGAGTTAAAAAATACACGAACATTCCCTGTGTTTTAGTgttgtacatttaaatatgcCCTCCACACTTTAATATTTGGATATTTTCAATGTGTTCATAAAAAGGTCCAATAAATACAGTCCAATAATGCCATT

Function

symbol description
mbd5 Predicted to enable chromatin binding activity. Predicted to be active in chromocenter and nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder and autosomal dominant non-syndromic intellectual disability 1. Orthologous to human MBD5 (methyl-CpG binding domain protein 5).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0010369 chromocenter cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070209-125 Predicted to enable chromatin binding activity. Predicted to be active in chromocenter and nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder and autosomal dominant non-syndromic intellectual disability 1. Orthologous to human MBD5 (methyl-CpG binding domain protein 5).

Ensembl:

ensembl_id ENSDARG00000059581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062186 True 3286 mRNA 0.60 6 48862 60202

Neighbor

gene id symbol gene type direction distance location
XLOC_031726 MARF1 coding upstream 5803 31684 ~ 43059 (+)
XLOC_031725 CZQB01141835.1 coding upstream 18865 28203 ~ 29997 (+)
XLOC_031728 sowahcb coding downstream 8018 68220 ~ 69904 (+)
XLOC_031729 crygm4 coding downstream 11838 72040 ~ 72996 (+)
XLOC_031730 SMARCA4 coding downstream 23671 83873 ~ 98930 (+)
XLOC_031731 ldlrb coding downstream 42304 102506 ~ 109626 (+)
XLOC_031732 ap1m2 coding downstream 52377 112579 ~ 119859 (+)
XLOC_031744 NA non-coding downstream 385431 445633 ~ 453037 (+)
XLOC_031750 NA non-coding downstream 899055 959257 ~ 960829 (+)
XLOC_031751 NA non-coding downstream 1003736 1063938 ~ 1079773 (+)
XLOC_031752 NA non-coding downstream 1225263 1285465 ~ 1285894 (+)
XLOC_031753 NA non-coding downstream 1308848 1369050 ~ 1369364 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000130_00648367_00657797 NA coding CI01000130 null 648169 ~ 657797 (-)