XLOC_033587 (AMDHD1)


Basic Information

Item Value
gene id XLOC_033587
gene name AMDHD1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19389304 ~ 19401501 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065714
AAATATTTACCTGCTCTTTCAGCCTTCAAACTCTGCTCTGCAACACCGCGACGAAGTTAGACTAACAATGTCTGCAAACAGTTTCAAACTTCTAGTCAAGAATGCAACACAGCTAGTGTTAGTTTGTAGAAATGGGGAAAAGTATCTTACCAGAGATGAGATGCAGACTCTGGCTGTGCTGGAGAACGCCAGTGTGCTGATTGGACAtgATGGACTAATCAAAGCTGTTGGACCAGCAGACGTCATTGAAACTCAGTTTGAAGGAGCAAAGTTTGACAAAGTTCTCGACGCTTCCGGCATGTGTGTTCTCCCAGgtcTTGTTGATGCACACACGCATCCAGTGTGGGCTGGAGATAGAGTGCATGAGTTTGCCATGAAGCTGGCCGGCGCCACATATATGGAGGTGCATGAAGCTGGAGGAGGAATCCATTTCACAGTGGCACACACTCGCTCGGCCAGTGAACAGCATCTGTTGGCTGCTTTGAAAAGCCGTCTGGAGCGCATGATGAGAGCTGGAACCACACTGGTGGAGTGTAAGAGCGGATACGGACTCGAGCTGGACACTGAAGTCAAGATGCTGAGAGTGATCAATTCGGCAAGAAAGTCGTTGCCCATCGGGATATCAGCAACATACTGTGGAGCCCACGCAGTGCCCAAAGGTAAAACTATGGAAGAAGCCACTAAGGACATTGTTGCAGTGCAGCTGCCCAAAATAAAACATCTAAGCGCTTCAGGTGATCTGCAAGTGGACAACATTGATGTATTTTGTGAGAAAGGTGTGTTCGATCTCACCTCCACTCGTTGCATACTCCAGGCCGGCAAAGACATGGGCCTCAACATCAACTTTCATGGCGATGAACTCCATCCTATGAACTCGGCACAtCTTGGTGCAGAACTTGGCGCTTTAGCGATCAGCCATTTAGAGGAAGTGACATATGATGGGATTGTTGCCATGGCGAAATCGAAAACATCAGCGGTCCTCCTTCCCACCACTGCATATATATTACGACTTACTCCACCACGTGCGAGAGATATGCTTGATGCTGGAGTCATAGTGGCTCTGGGCAGCGACTTCAACCCCAATGCCTACTGCTGCTCAATGccTATGGTGATGCACTTGGCCtgtgtgatgatgaaaatgtctATGCCAGAAGCTCTGGCCGCAAGCACCATAAATGCAGCCTACGCTCTCAACCGCTCACAAACACATGGCTCGCTTGAAGTTGGGAAACAGGGAGACCTTGTGATCGTCAATGCACCACGGTGGGAACATCTGGTCTACCAGTTTGGGGGTCATCAAGAGCTCATCAAATATGTCATAATCAAAGGCGATTTTGTTTATGAAAATGATAAAGTTTTGAATCTTTGAACATCCCACAGTGAATAAACACAAGATGGATTGTGTGGTAAAACtgtattattatgataataaaaagGCTTGGTACCAtactcaaaatttaaaaaatggtttgttgataaaataaataattccatACATATATTCATAAGTTAATTCAATTTACAAACAGTTTGAAATCATACAAACATGCTTTGTACCAGTCTGCCCTTTAATCTCCAGCATGCTTCTGTCATCGTAATGGAAATGCCCGGTTCAGCACCAGCTCCAACCTCTCTCCTCCGAGTGCACATGCATCTAACACACACACcagcctctgattggtcagctgattTGCAGTGGCGATCAAGTCCGCTTTGGGAGAAGAGAAACCATTATTAAAACTTTACCGATTTTAGCACTCAaaggaaataaaatgaaattaaaacaaa
>TCONS_00065715
tgATGGACTAATCAAAGCTGTTGGACCAGCAGACGTCATTGAAACTCAGTTTGAAGGAGCAAAGTTTGACAAAGTTCTCGACGCTTCCGGCATGTGTGTTCTCCCAGgtcTTGTTGATGCACACACGCATCCAGTGTGGGCTGGAGATAGAGTGCATGAGTTTGCCATGAAGGTTTATTTCTCCATTAAATCCTTCTAACTAAATATTTCCATTTGAGCTTTATATTTTtatgcacttgctgctattgcactcctggttagacctaaactgcatttcatgcCTTCttcttgtacatgtgtaatgacaataaagttgaatctaatgcATATTGCATGGATACATCTTTAAGTCTTGATGTCAGAGATGTATGAAGTATCTAAAGTAATTGAGCATCATCATTGTGTTGTGTGTACAGCTGGCCGGCGCCACATATATGGAGGTGCATGAAGCTGGAGGAGGAATCCATTTCACAGTGGCACACACTCGCTCGGCCAGTGAACAGCATCTGTTGGCTGCTTTGAAAAGCCGTCTGGAGCGCATGATGAGAGCTGGAACCACACTGGTGGAGTGTAAGAGCGGATACGGACTCGAGCTGGACACT
>TCONS_00065716
CGAACAATAAGttgtttgaaactgaaaaatgAAAACTCAAAAAGAAGAACTAAATCTGATaaaactttagtttaggtcaaaattcatgctattaactactagTTTATTACTTGCCTGACATTAAGACatgtttattagtagttataaagtataatcctattctgcatccctaatcctacacaAAACCTAagcccaacttctaccttactaactaataataaacaagctaattagtattttattaagctagtagtgttagttaatggtttgtttataCTGTGAAATGTGACCAaacctaaagtgttaccaaaaatccAGGGCAAGAACTAATATTTCCAGGACATTTGGTCATTTCTACCAATTTCTATGTTATTACCATGACTAAAAAAACAACCTTCTAAAATTCCAGGTTTTCCATGGAAGTATAGGAATCCTGCTAAAGGAAGCTAACAATGTAAAAAGCACTGTGTTGTGTCTGTTTTAGACTTACTCCACCACGTGCGAGAGATATGCTTGATGCTGGAGTCATAGTGGCTCTGGGCAGCGACTTCAACCCCAATGCCTACTGCTGCTCAATGccTATGGTGATGCACTTGGCCtgtgtgatgatgaaaatgtctATGCCAGAAGCTCTGGCCGCAAGCACCATAAATGCAGCCTACGCTCTCAACCGCTCACAAACACATGGCTCGCTTGAAGTTGGGAAACAGGGAGACCTTGTGATCGTCAATGCACCACGGTGGGAACATCTGGTCTACCAGTTTGGGGGTCATCAAGAGCTCATCAAATATGTCATAATCAAAGGCGATTTTGTTTATGAAAATGATAAAGTTTTGAATCTTTGAACATCCCACAGTGAATAAACACAAGATGGATTGTGTGGTAAAACtgtattattatgataataaaaagGC

Function

symbol description
amdhd1 Predicted to enable imidazolonepropionase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine catabolic process to glutamate and formamide. Predicted to be located in cytoplasm. Orthologous to human AMDHD1 (amidohydrolase domain containing 1).

GO: NA

KEGG:

id description
ko00340 Histidine metabolism

Ensembl:

ensembl_id ENSDARG00000007366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065714 False 1788 mRNA 0.45 9 19389304 19401501
TCONS_00065715 False 602 lncRNA 0.44 2 19392400 19393083
TCONS_00065716 True 914 lncRNA 0.37 3 19398086 19401151

Neighbor

gene id symbol gene type direction distance location
XLOC_033586 snrpf coding upstream 11280 19374683 ~ 19378024 (+)
XLOC_033585 NA coding upstream 215342 19173197 ~ 19173962 (+)
XLOC_033582 CU972454.5 coding upstream 334981 19016023 ~ 19054323 (+)
XLOC_033584 CU972454.3 coding upstream 362234 19026314 ~ 19027070 (+)
XLOC_033583 NA coding upstream 364379 19019180 ~ 19024925 (+)
XLOC_033588 si:ch211-212k18.6 coding downstream 23356 19424857 ~ 19477650 (+)
XLOC_033589 si:ch211-212k18.7 coding downstream 80583 19482084 ~ 19491627 (+)
XLOC_033590 si:ch211-212k18.8 coding downstream 93878 19495379 ~ 19502294 (+)
XLOC_033591 si:ch211-212k18.9 coding downstream 101243 19502744 ~ 19506453 (+)
XLOC_033592 NA coding downstream 111264 19512765 ~ 19514903 (+)
XLOC_033581 CU972454.2 non-coding upstream 373793 19014767 ~ 19015511 (+)
XLOC_033580 CU972454.1 non-coding upstream 380725 19007840 ~ 19008579 (+)
XLOC_033598 NA non-coding downstream 235228 19636729 ~ 19638389 (+)
XLOC_033599 NA non-coding downstream 262535 19664036 ~ 19664661 (+)
XLOC_033613 NA non-coding downstream 980564 20382065 ~ 20642913 (+)
XLOC_033615 NA non-coding downstream 1051625 20453126 ~ 20464807 (+)

Expression


Co-expression Network