XLOC_033589 (si:ch211-212k18.7)


Basic Information

Item Value
gene id XLOC_033589
gene name si:ch211-212k18.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19482084 ~ 19491627 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065719
ATGAGACTCAGACTGATTCTCCAGTTACTGTCATGCATGGCGAATAAGTGCAGTGTGCGACAGACTTTCAACACCACACAGGCTACTGACGCCGCTTTACAGCTGACAATCCAGCGAAGTTTCTGTGTCAGGTGCATCGAAAAACAGACGAAAATGAAGCACGGATTATTAATGATCGCCATTTGCATTGCTGCAGCAG
>TCONS_00065720
GTTTTCATTCACTTTATAGCAAGCTGAGCACTGTATTGAATTTCTGGGACGCTGCTGAAAGTCCAACTACAACTGTGATTGGACAAACACTAAGACCAGACTTCCTTTGCTTTATCAGTGGTTTCGTTTCAGGCGAATAAGTGCAGTGTGCGACAGACTTTCAACACCACACAGGCTACTGACGCCGCTTTACAGCTGACAATCCAGCGAAGTTTCTGTGTCAGGTGCATCGAAAAACAGACGAAAATGAAGCACGGATTATTAATGATCGCCATTTGCATTGCTGCAGCAGCTCTGACTTCAGGTCAGTACAGTTCAACATTGCAAGGAGGTCCTACAAGCAAACCTGACCCAACCACAACCACAACCGCCCCTCCCCCGACTACAACCACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACTCCAATCCCAGCTCCAACACCACCTGCCAACTTGACAGTGGGGAAATATAATTCTAGTCAAGATGGAAAATTATGTATTCTGGCTGACTTTGCAATTGGGATCCGTGTGAACACCAGCGAGGTTAACGACACATTCATTGTACAGCCAAGCAAAACTACTTCCAGTGGAGGATGTTCGGAAAAGACAGCTAATATCAATCTTTTATTCGGTGAAGGTTCAGTTATCTTAAAATttgtaaatGATGATACAGCACAAAAGATCTATGTGCAGCTTGTGGAAGTTGACTTGACCTATGCTTTCAATACTAAAGTTGGGTCAAAAAACTACTCTGGGAAGAATGACTCTTTGCAGCTGTTTGCTTCTGTTCCTGGTCATTATTACTCCTGCAGCTCTCAGACGGTGTACATGGGGAACGGTCTAAGTCTAGACTTGACCCACAACAAAATTCAAGCCTTCAACTTCAAAAACAACGAATTCGGGACACCTGATGTGTGCAAGGCTGATCAACCTGACTACCGCGTTCCCATCGCCGTGGGCATAATCCTCATCATCCTCATCGTCATTGTAGTCATCGCTTATCTTATCAGCAGGAAACGGCGGACTGATGGCTACCAGTCACTATAGAGGCctaaagtttgttgttgttgttcatgtAAAAACCAGCAATTCCGGTTTACGGGAATTTTAATACTGTTATGCATGTCGTAAGTGAATGTTACTTATGTGTACGGATGAACATGGATGGCCTTGGATATGTCCGAACATTGTTTACTATGCAGAGACTATATGGCACATCCTAATACAAGCTGATGGGGCCACATCACAGTTACCACTAAAAGAATATCGATAAAACTAGATAAATGGCTCAGTATATGGCTTATTTAGCATATCTTTATAAAATAATCCCCCTTTTTCAAGAACCTAACCTTATGCTGACAGAAGGATGTGCATAATTTATTGTGGCTCCATCTTAAATGTAAGTGCTCTCTATCTATAGGTACTCTTTTGTTCCTGACACAAATCAAATGCGTTTTATTTGTGATAACCAATGTTAATCTGAGCTTTCCAAAAGGgctttaaaacataaaaagatgCATAAAGGGAATTCAGCTTCTTGTATTTGTTGATGCTTACACATCGTgttttgtaattaataatatatccgATTTTTAAAAGCAGTTTCATTCTGATGTGAATTATTATATTTCTGCTTTCAAAGCGAGTGTCTTTACTATACTGAATTGTGATCAGAATCTGCATTTATGCACTGAATAAAGGGAATAATGTTTGATTTTTggttatgaataataaataatttgttgagAGAa
>TCONS_00065721
TCCACCATTTGGTAAACGCCATTTTAATCGTGTATTTTGTTATACTGAAATATTAAGGAGCTGTGTTAAGTATATAAATGACTATCTATCTATGTTCACTTTACAACAAAACGAACTGGTTTAATCAAGGAAGTGGCGGTGGTGCAGGATACAGCTCTCTGACTTCAGGTCAGTACAGTTCAACATTGCAAGGAGGTCCTACAAGCAAACCTGACCCAACCACAACCACAACCGCCCCTCCCCCGACTACAACCACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACTCCAATCCCAGCTCCAACACCACCTGCCAACTTGACAGTGGGGAAATATAATTCTAGTCAAGATGGAAAATTATGTATTCTGGCTGACTTTGCAATTGGGATCCGTGTGAACACCAGCGAGGTTAACGACACATTCATTGTACAGCCAAGCAAAACTACTTCCAGTGGAGGATGTTCGGAAAAGACAGCTAATATCAATCTTTTATTCGGTGAAGGTTCAGTTATCTTAAAATttgtaaatGATGATACAGCACAAAAGATCTATGTGCAGCTTGTGGAAGTTGACTTGACCTATGCTTTCAATACTAAAGTTGGGTCAAAAAACTACTCTGGGAAGAATGACTCTTTGCAGCTGTTTGCTTCTGTTCCTGGTCATTATTACTCCTGCAGCTCTCAGACGGTGTACATGGGGAACGGTCTAAGTCTAGACTTGACCCACAACAAAATTCAAGCCTTCAACTTCAAAAACAACGAATTCGGGACACCTGATGTGTGCAAGGCTGATCAACCTGACTACCGCGTTCCCATCGCCGTGGGCATAATCCTCATCATCCTCATCGTCATTGTAGTCATCGCTTATCTTATCAGCA
>TCONS_00065722
GAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACCCATGCCCCGAACACAACCACTCCAATCCCAGCTCCAACACCACCTGCCAACTTGACAGTGGGGAAATATAATTCTAGTCAAGATGGAAAATTATGTATTCTGGCTGACTTTGCAATTGGGATCCGTGTGAACACCAGCGAGGTTAACGACACATTCATTGTACAGCCAAGCAAAACTACTTCCAGTGGAGGATGTTCGGAAAAGACAGCTAATATCAATCTTTTATTCGGTGAAGGTTCAGTTATCTTAAAATttgtaaatgtaagtattttcTCTGAATGTTCATCAATGATGtggtgacatttattttttttatctagaagTTTGTTTATGGTTGTAGTTTCTTATAATCACACTAGTGATATTCAACTGTTGTGTGTGGGTGCAACCTGAGTTTGTGTGGTCCAAAAAAAACA

Function

symbol description
si:ch211-212k18.7 Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Orthologous to human CD68 (CD68 molecule).

GO:

id name namespace
GO:0072594 establishment of protein localization to organelle biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1312 Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Orthologous to human CD68 (CD68 molecule).

Ensembl:

ensembl_id ENSDARG00000055504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065719 False 199 mRNA 0.47 2 19482084 19483168
TCONS_00065720 False 1853 mRNA 0.42 6 19482877 19491627
TCONS_00065721 False 978 mRNA 0.45 6 19483277 19490888
TCONS_00065722 True 492 lncRNA 0.42 2 19484269 19484850

Neighbor

gene id symbol gene type direction distance location
XLOC_033588 si:ch211-212k18.6 coding upstream 4434 19424857 ~ 19477650 (+)
XLOC_033587 AMDHD1 coding upstream 80583 19389304 ~ 19401501 (+)
XLOC_033586 snrpf coding upstream 104060 19374683 ~ 19378024 (+)
XLOC_033585 NA coding upstream 308122 19173197 ~ 19173962 (+)
XLOC_033584 CU972454.3 coding upstream 455014 19026314 ~ 19027070 (+)
XLOC_033590 si:ch211-212k18.8 coding downstream 3752 19495379 ~ 19502294 (+)
XLOC_033591 si:ch211-212k18.9 coding downstream 11117 19502744 ~ 19506453 (+)
XLOC_033592 NA coding downstream 21138 19512765 ~ 19514903 (+)
XLOC_033593 ttc5 coding downstream 36638 19528265 ~ 19538406 (+)
XLOC_033594 si:ch211-212k18.5 coding downstream 60754 19552381 ~ 19558842 (+)
XLOC_033583 NA non-coding upstream 457159 19019180 ~ 19024925 (+)
XLOC_033581 CU972454.2 non-coding upstream 466573 19014767 ~ 19015511 (+)
XLOC_033580 CU972454.1 non-coding upstream 473505 19007840 ~ 19008579 (+)
XLOC_033598 NA non-coding downstream 145102 19636729 ~ 19638389 (+)
XLOC_033599 NA non-coding downstream 172409 19664036 ~ 19664661 (+)
XLOC_033613 NA non-coding downstream 890438 20382065 ~ 20642913 (+)
XLOC_033615 NA non-coding downstream 961499 20453126 ~ 20464807 (+)

Expression


Co-expression Network