XLOC_034562 (spg21)


Basic Information

Item Value
gene id XLOC_034562
gene name spg21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 13625929 ~ 13648663 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067307
TTTAATTGACAGTTCGTTCGCATGTCAGCAATGGAGGAGATAAGTGTATCTCCAGACTACAACTGGTTCAGAAGCACCGTGCCTCTGAAAAGAATAATCGTGGATGATGATGACAGTAAAGTCTGGTCGCTGTATGACGCCGGGCCCAAAAGTATCAGGTGTCCCATCATCTTCCTGCCACCCGTGAGCGGCACTGCAGAGGTTTTCTTCCAGCAAGTGTTGGCTCTGTCGGGATGGGGCTACCGTGTCATCTCCCTCCAGTATCCAGTCTACTGGGACCTGCTGGAATTTTGTGATGGTTTTAGAAAGCTTTTGGACCATTTACAACTGGACAAGGTGCATTTGTTTGGTGCTTCTCTGGGTGGATTCCTGGCTCAGAAATTTGCCGAAGTCACGTACAAATCGCCTCGAGTTCACTCTCTGGTCCTGTGCAATTCATTTAGTGACACGTCCATCTTCAACCAGACATGGACCGCAAACAGTTTCTGGTTGATGCCTTCATTTATGCTCAAAAAGATTGTGCTTGGTAACTTCGCCAAAGGACCTGTGGACCCAAAAATGGCAGACGCAATTGACTTCATGGTTGACAGACTGGAAAGCTTGAACCAGAGTGAACTCGCCTCTCGACTGACGCTAAACTGCCAAAACTCCTACGTGGAACCACACAAGATTAAGGACATCGCAGTCACCATAATGGATGTGTTTGATCAGAGTGCCCTGTCACAGGAGGCAAAAGAAGAGATGTATAAGCTGTACCCCAATGCTAGAAGAGCTCACCTCAAAACTGGCGGGAACTTCCCTTATCTCTGCAGAAGCGCAGAAGTCAACCTGTACATACAAATACATCTGCGTCAGTTTCACGGTACACGTTACGCAGCTATCAGTCCGGAGATGGTGAGCGCGGAGGAGCTGGAAGTGCAGAGGACACATCTTAGTAATAACAGCGAGAGCGAAGACGAATCGTAGAGATACACATCCTGTGAACGATCGGATTCAGACACACAGCAATCAGAGATCACGTTTTGGTATTCTGTTTTTCTACCATATATGCTCTGGTAAATGTGAACGGACTTTGAATGAGCCTATTTTTACTTTTAcgaaaaaaaacaagcaacaatATTTTGATAAGTATTACGACCGACTGTAAATAAGTGAATTCATAGATAATAGGGTTTTCATGAAATGCCATATTTTGACCCGGTTGCCTTATTACACCATATAAAAACGCACGTCTGTGTTGAATTCAGCACTTTTTACTCCTCTTCTTTAATCTTCTGCCTTTTTGTATGTTggtgttgtttttctgttgtgtATTGGGTTCGTTTTTATGAGCGTTTGTTAATGTCATTTTGCTGTTGTTTGTTTGGAGTCATGCACTGATATAAAATGAAATTTGTTTCAATGCCA

Function

symbol description
spg21 Predicted to enable CD4 receptor binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol and trans-Golgi network transport vesicle. Human ortholog(s) of this gene implicated in Mast syndrome and hereditary spastic paraplegia. Orthologous to human SPG21 (SPG21 abhydrolase domain containing, maspardin).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042609 CD4 receptor binding molecular_function

KEGG:

id description
ko04144 Endocytosis

ZFIN:

id description
ZDB-GENE-040426-2722 Predicted to enable CD4 receptor binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol and trans-Golgi network transport vesicle. Human ortholog(s) of this gene implicated in Mast syndrome and hereditary spastic paraplegia. Orthologous to human SPG21 (SPG21 abhydrolase domain containing, maspardin).

Ensembl:

ensembl_id ENSDARG00000007760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067307 True 1407 mRNA 0.44 8 13625929 13648663

Neighbor

gene id symbol gene type direction distance location
XLOC_034561 NA coding downstream 52293 13564661 ~ 13573636 (-)
XLOC_034560 CT030046.1 coding downstream 173540 13452269 ~ 13452389 (-)
XLOC_034559 si:ch73-119p20.1 coding downstream 244800 13375565 ~ 13381129 (-)
XLOC_034558 polr2l coding downstream 254445 13363898 ~ 13371484 (-)
XLOC_034557 sdhaf2 coding downstream 263339 13353080 ~ 13362590 (-)
XLOC_034563 kbtbd13 coding upstream 100024 13748687 ~ 13750108 (-)
XLOC_034564 rlbp1a coding upstream 219059 13867722 ~ 13884610 (-)
XLOC_034565 NA coding upstream 238371 13887034 ~ 13887619 (-)
XLOC_034566 slc39a1 coding upstream 248106 13896769 ~ 13906409 (-)
XLOC_034567 CR627485.1 coding upstream 446131 14094794 ~ 14094911 (-)
XLOC_034556 NA non-coding downstream 289589 13331403 ~ 13336340 (-)
XLOC_034552 CR926461.1 non-coding downstream 906018 12719781 ~ 12719911 (-)
XLOC_034548 NA non-coding downstream 1566828 12028925 ~ 12059101 (-)
XLOC_034568 NA non-coding upstream 663510 14312173 ~ 14352632 (-)
XLOC_034569 NA non-coding upstream 704851 14353514 ~ 14381994 (-)
XLOC_034571 dre-mir-7a-2 non-coding upstream 801861 14450524 ~ 14450620 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000105_01513919_01516318 SPG21 coding CI01000105 null 1513919 ~ 1516318 (-)