CI01000105_01513919_01516318 (SPG21)


Basic Information

Item Value
gene id CI01000105_01513919_01516318
gene name SPG21
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000105
NCBI id null
chromosome length 3526334
location 1513919 ~ 1516318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000105_01513919_01516318.mRNA
ATGGAGGAGATAAGAGTATCTCCTGATTATAACTGGTTCAGAAGCACTGTACCTCTGAAAAGAATAATTGTGGATGACGATGACAGTAAAGTCTGGTCGTTGTATGATGCTGGGCCGAAAAATATCAGATGTCCCATCATCTTCCTCCCACCCGTGAGCGGCACCGCAGAGGTTTTCTTCCAGCAGGTGCTGGCTCTCTCCGGATGGGGCTACCGCGTCATCTCGCTCCAGTATCCTGTCTATTGGGATCTGCTGGAATTTTGTGATGGATTTAGGAAGCTTCTAGACCACTTACAACTAGACAAGGTGCACTTGTTTGGCGCTTCGCTGGGTGGATTCCTGGCTCAGAAATTTGCTGAAGTCACGCATAAATCTCCCAGAGTTCACTCTCTGATCCTGTGCAACTCCTTTAGTGACACATCGATCTTCAACCAGACATGGACTGCAAACAGTTTCTGGTTGATGCCTGCGTTCATGCTTAAAAAGATTGTGCTTGGTAACTTTGCCAAAGGACCTGTGGACCCAAAAATGGCAGATGCAATTGACTTTATGGTTGACAGACTGGAAAGCCTGAACCAGAGTGAACTGGCTTCTCGACTCACCCTGAACTGCCAGAACTCCTATGTGGAGCCTCACAAAATAAAGGATGTTGCCGTCACCATAATGGATGTTTTTGATCAGAGTGCCCTGTCACATGAGGCAAAGGAAGAGATGTATAAGCTTTACCCAAACGCTAGAAGAGCTCATCTCAAAACTGGCGGAAACTTCCCCTATCTGTGCAGAAGTGCAGAAGTTAACCTGTACATACAA

Function

symbol description
spg21 Predicted to enable CD4 receptor binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol and trans-Golgi network transport vesicle. Human ortholog(s) of this gene implicated in Mast syndrome and hereditary spastic paraplegia. Orthologous to human SPG21 (SPG21 abhydrolase domain containing, maspardin).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19367 SPG21; maspardin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000105_01513919_01516318.mRNA True 810 mRNA 0.47 7 1513919 1516318

Neighbor

gene id symbol gene type direction distance location
CI01000105_01364107_01364379 NA coding downstream 147216 1361342 ~ 1366703 (-)
CI01000105_01181447_01186008 RPLP2, RPLP2L coding downstream 327911 1181422 ~ 1186008 (-)
CI01000105_01104888_01119177 SH3GL3A, SH3GL3 coding downstream 394742 1104570 ~ 1119177 (-)
CI01000105_01080311_01083160 NA coding downstream 430759 1079401 ~ 1083160 (-)
CI01000105_01047496_01049681 NA coding downstream 464238 1047484 ~ 1049681 (-)
CI01000105_01579475_01580951 KBTBD13 coding upstream 63157 1579475 ~ 1580951 (-)
CI01000105_01594096_01594462 NA coding upstream 76615 1592933 ~ 1594462 (-)
CI01000105_01633375_01636353 RLBP1 coding upstream 115817 1632135 ~ 1636353 (-)
CI01000105_01638030_01639731 NA coding upstream 121531 1637849 ~ 1639943 (-)
CI01000105_01674679_01675478 NA coding upstream 158311 1674629 ~ 1675663 (-)
G316678 NA non-coding downstream 11152 1502357 ~ 1502767 (-)
G316613 NA non-coding downstream 36726 1467371 ~ 1477193 (-)
G316649 NA non-coding downstream 67713 1445997 ~ 1446206 (-)
G316647 NA non-coding downstream 68919 1444737 ~ 1445000 (-)
G316646 NA non-coding downstream 69187 1444515 ~ 1444732 (-)
G316685 NA non-coding upstream 89839 1606157 ~ 1617972 (-)
G316711 NA non-coding upstream 99024 1615342 ~ 1616418 (-)
G316684 NA non-coding upstream 106528 1622846 ~ 1631464 (-)
G316714 NA non-coding upstream 133130 1649448 ~ 1649723 (-)
G316715 NA non-coding upstream 134337 1650655 ~ 1651236 (-)
G316592 NA other downstream 118947 1336036 ~ 1394972 (-)
G316296 NA other downstream 1127726 382583 ~ 386193 (-)
G316716 NA other upstream 135975 1652293 ~ 1652634 (-)
CI01000105_01891362_01892340 NA other upstream 366825 1883143 ~ 1893784 (-)
G317081 NA other upstream 517311 2033629 ~ 2094009 (-)
G317127 NA other upstream 691055 2207373 ~ 2208081 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034562 spg21 coding NC_007118.7 CM002891.2 13625929 ~ 13648663 (-)