CI01000105_01579475_01580951 (KBTBD13)


Basic Information

Item Value
gene id CI01000105_01579475_01580951
gene name KBTBD13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000105
NCBI id null
chromosome length 3526334
location 1579475 ~ 1580951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000105_01579475_01580951.mRNA
ATGACAGGAGGTAACCTGATGGAGACAAGCAGCTGCGCTGGCTCAGAGATGGACGTGAGGAAGGCGGTTTACCAGTCGACAGGTTTCATGAAAACAACAGTGAAGGTGATCTTTGGCGAAAGTGCTTTTACGGTGGACAGAAGCCTCCTGGAGGAGCATTGTGAATACTTTCGGGCGCTTTTCCAGTCTGGCATGAAGGAATGCAAGGAGGATGAGGTGTGTCTTCAGGTGCCGAGCGCTCGTGGATTCCTGGTCGCCCTCCGTGTGATACACGGCGAAAGACCTATGCTGAGCGGTGACGAAATTGTTGACGCCATCGAGTGTGCTGCGTTCCTTCACATAGAGCTTCTAACTGAGCACCTCATAAACATTATCAATTCAGACAACTGCCTTCTTATGTATCACACAGCGGCGACTTTTGGGTTAATGAAGCTCTTCGGCAGTGCGGCTTTGTTCATTCGAGACATTTATCAAGACCTCGAAGAAGATGTGAAATGTTTGCCAGAGGATTTGATTGAATATATAGAGTCTCTTGTTCCTAGTACATACATCACCGTTGGTAGTCATTCGCCAACCATCAAGCTACTGCAGGACTTCATGAGGACTGTTTGTTACCTTGATGAGGACGAGAAAGACTGGAAGGTTCTCACTCACTTGCCTCTCAACGCCAGCACCACCATGGCAGGAGTTACGGTTTTAGACAACAAGCTCTACATTGTTGGAGGAGTCTATGATATTACCAATAAAGTTGTGGATTCTGGTTTCTGCTATGATGTATCTACAGATACATGGAGCACATTTTCCAGCCCTCAGCAACTTCGCTACAACTGCACCCTCGTTGGCCATGTGGGCGACCTTTTTGTCATTGGCGGAGAGTATGAAAGGACCATAATGTCCTCTGTGGAGAAATACAAAGTCTCATCGGACACCTGGAGCTTTGCTGCCCATCTCCCAAAACCTGCATCCGCCGTGGCTTGCGCCAAAGCCATGAGAAGACTGTTCATATGCCTCTGGAGACCTAAAGATGCTACGGAGATTTATGAGTACATAGCGAACAAGGATGAATGGATGTTAATCACGACACTTGTTCGGCATCAAAGTTATGGTCATTGCATGGTGGCCCACAGGGACAATTTGTACGTCATGAGGAACGGGCCATCTGATGATTTTTTGAGATGCATGATGGACTGTTATAATTTGACTTCAGGTCAGTGGACGGCCATGCCCGGGCAGTATGAGAACAGTAAGGGGGCTTTGTTTACCGCGGTAGTGCGAGGTGACTCTGTGTTCACAGTGAACCGCAGAGCGACAGTGGAATATGCTATTGAGGACAACAAATGGAGGACGAAAAAAGAAATGACAGGATTTCCAAGAATCGGCTCCATGTGGACTTTCCTCTTGAGACTGCCAAAGAAAAGCAGAGAGCTTTTACAAAAGAAAAATAATGGAGCTGAGATCTCATCTGACCTCAGCTCAA

Function

symbol description
kbtbd13 Located in Z disc. Human ortholog(s) of this gene implicated in nemaline myopathy 6. Orthologous to human KBTBD13 (kelch repeat and BTB domain containing 13).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000105_01579475_01580951.mRNA True 1477 mRNA 0.47 1 1579475 1580951

Neighbor

gene id symbol gene type direction distance location
CI01000105_01513919_01516318 SPG21 coding downstream 63157 1513919 ~ 1516318 (-)
CI01000105_01364107_01364379 NA coding downstream 212772 1361342 ~ 1366703 (-)
CI01000105_01181447_01186008 RPLP2, RPLP2L coding downstream 393467 1181422 ~ 1186008 (-)
CI01000105_01104888_01119177 SH3GL3A, SH3GL3 coding downstream 460298 1104570 ~ 1119177 (-)
CI01000105_01080311_01083160 NA coding downstream 496315 1079401 ~ 1083160 (-)
CI01000105_01594096_01594462 NA coding upstream 11982 1592933 ~ 1594462 (-)
CI01000105_01633375_01636353 RLBP1 coding upstream 51184 1632135 ~ 1636353 (-)
CI01000105_01638030_01639731 NA coding upstream 56898 1637849 ~ 1639943 (-)
CI01000105_01674679_01675478 NA coding upstream 93678 1674629 ~ 1675663 (-)
CI01000105_01891362_01892340 NA coding upstream 310079 1883143 ~ 1893784 (-)
G316678 NA non-coding downstream 76708 1502357 ~ 1502767 (-)
G316613 NA non-coding downstream 102282 1467371 ~ 1477193 (-)
G316649 NA non-coding downstream 133269 1445997 ~ 1446206 (-)
G316647 NA non-coding downstream 134475 1444737 ~ 1445000 (-)
G316646 NA non-coding downstream 134743 1444515 ~ 1444732 (-)
G316685 NA non-coding upstream 25206 1606157 ~ 1617972 (-)
G316711 NA non-coding upstream 34391 1615342 ~ 1616418 (-)
G316684 NA non-coding upstream 41895 1622846 ~ 1631464 (-)
G316714 NA non-coding upstream 68497 1649448 ~ 1649723 (-)
G316715 NA non-coding upstream 69704 1650655 ~ 1651236 (-)
G316592 NA other downstream 184503 1336036 ~ 1394972 (-)
G316296 NA other downstream 1193282 382583 ~ 386193 (-)
G316716 NA other upstream 71342 1652293 ~ 1652634 (-)
G317081 NA other upstream 452678 2033629 ~ 2094009 (-)
G317127 NA other upstream 626422 2207373 ~ 2208081 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034563 kbtbd13 coding NC_007118.7 CM002891.2 13748687 ~ 13750108 (-)