XLOC_034629 (mllt3)


Basic Information

Item Value
gene id XLOC_034629
gene name mllt3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18779555 ~ 18881358 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067424
GTGAAATACCTGCTGTGTTCCTATACAGCGTGACACTTTAACCACAGCAGCATTACTGACAGCAAAGAGATCAGGGTGCCGTTCAGGTGAAACTGGAACTCGGCCATCGTGCCCAGGTCCGAAAGAAACCCACCGTTGAAGGTTTTACGCACGACTGGATGGTGTTTGTCCGCGGACCGGAGCACAGCAACATTCAGCATTTTGTTGAGAAAGTCGTCTTTCATCTACACGAAAGTTTCCCGAGACCAAAAAGAGTGTGCAAAGATCCACCATATAAAGTTGAAGAGTCTGGATACGCTGGCTTTATCTTGCCTATTgaagtttactttaaaaataagGAAGAACCCAAAAAAGTGCGCTTCGACTACGATCTGTTCCTGCATCTGGAGGGTCACCCGCCTGTCAATCACCTGCGCTGTGAAAAACTCACCTTCAACAACCCCACGGAAGAGTTTCGCAGGAAGCTGCTCAAGGCCGGAGGGCAACGGGATCCTCACAAAAGATCTTCAGAGGACTCAAAGGTAATGGTAATGCAGGAAGGCTCCACTTCTTTGTTCGGGCCACATCTGAAGCTGCCCACATTACCCAGCAGCTCATTAACATTGACCTTCTCTGATGCCAAAAAGAGCAAGTCGTTCCCAGGGTCAAAGGACGGCTCCAAAAGCAGCAGTGCTCTTACAACTACCAACAACATCAGCAGCAGCTCCCTCAAGCTCCACAAACCACCCAAGGACCACAAAGACCACAAGGATAAGCCTTCTAAAGACTCAAAAGAGTCCAAAAGTGCCTTCAGAGATTTCAGCAAGGACTCTGGAAAACTCTCTAAAGATTCCAAAAAACCCAAAGAGAATCAACCAATTCAGGAAGATCGGCCTATTCCTCAAATGGGGTTCAAGGAGCCCAAGAGCGCGTCGAAGGAGCAGCGCTCATCCGAGCTCAGCTTCTCAAGCCTGAGTCAAAGTAAACGGCGGCCTGTGCTGGACAATGAAGGCCATGTTACCAAAAAACGGAAAAGCAGTTTTTCGGAGAGCTCGCAAAAGCAGCAAGCGTGTCCTGCCCTGCTGCAGCAGCAGCACCATCATTCGGATAAAAAGGTTTTGAAAGACAAGCCGCAGATCCGGCATAATCGATTACAAAACAGTGAACTTTCAGAGAAGAAAAAGCTGCAAGCATTACCGCCCTTCCAGAATGTGTTGGACCCCAATGACTCTGATATGGATGACAACACCTTCACAAGATCAGATTCAGATCAGCCAAGTCCGGCCAGTTCCAGCTCCAGTTCCAGCTCCGGCTTTGGACGTGGACACAAACGCCAAGTGTTGGGCCCTTTGCGCTCAGTGATCCCAGATTTGCACTCGGATGAAAACGAAGAGGATTCAGAAGAGGACGATGATAATGACATGGACTCGGACTTAGAGCGACCAGTGCACACTCAAATGACACATCGGCACCGCAGGGTGAGTTTAAGTGACGGCAGTGAGAGTGAAAACAGCTCTGGCTCGTCACCGCTACCCCATAATGATCCTCCGCCGTTGCTGAAAAACAGCAGTAACCAGATTGAAGTGAAGGGTCCTATAAAACAGGCGAAGatggacaaaaataaaaacattgactgTGACAAGGCGTACTTGGATGAGCTGGTGGAGCTTCACAGAAGACTAATGGCACTGAGGGAAAGGCACATATTACAGCAGATTGTAAACCTCATTGAAGAAACGGGACACTTTCACATCACAAACACAACCTTTGACTTTGACCTTTGCTCTCTGGACAAAACCACAGTTCGGAAGCTGCAAAGCTACCTGGAGACTACCGGATCGTCTTGAAAACTCGTGCAGCTGGCTGCCACCAGGAGGGAAATCACCTCCTTTTTGCCcttctttagtttttttgttccTCCTAAAGAGAAACTCATAAGGCAATGGAAAGGATCCGCTTTCATTCCAGAGCTCCTCTCATCTCTTGAATCGCCTCAGAAGTTGACAACATTTATTCCAGGAGTCTGGAGAGTTTCACCTAAAAAGCCTTGATAATCCGACATTGCCAAAAAAATACTCCAAAACAACATACATTTGTGTATATTGTTACTTGCGTATGAATGTTTGATAGGTTCTTTTGcgatgaatgaatgcatgtttcAACACTGCCTTACCACACTGTCTATTTATTGAGTATGagtttcaagtgtgtgtgtgtgtaagtgcaaatGATAATTAAACTTGTGCAAGCACTTGGGAACATCCTCATCTCATTGACAATGGAACATGATTTTCTTTCACGGTTTTTATTGACCATAAGCAACGTTTTTCATGTTGTGCATTAACGGTTTTAGATTTTGCTGGCTGGAAGAATACTTTTAGCTCTACAATGAAAACTGCTACATACTACTAAACAATACAATGTTGCCCTTTTAAAGAGGTAGTTTTAATTCTgcgatcatttactcaccctccacttgttctGAGCCTGTTTGAgatctgttgaacactaaagaatgTTGGGAATAAAAGagtcattgac
>TCONS_00069172
TCGCAAAAGCAGCAAGCGTGTCCTGCCCTGCTGCAGCAGCAGCACCATCATTCGGATAAAAAGGTTTTGAAAGACAAGCCGCAGATCCGGCATAATCGATTACAAAACAGTGAACTTTCAGAGAAGAAAAAGCTGCAAGCATTACCGCCCTTCCAGAATGTGTTGGACCCCAATGACTCTGATATGGATGACAACACCTTCACAAGATCAGATTCAGATCAGCCAAGTCCGGCCAGTTCCAGCTCCAGTTCCAGCTCCGGCTTTGGACGTGGACACAAACGCCAAGTGTTGGGCCCTTTGCGCTCAGTGATCCCAGATTTGCACTCGGATGAAAACGAAGAGGATTCAGAAGAGGACGATGATAATGACATGGACTCGGACTTAGAGCGACCAGTGCACACTCAAATGACACATCGGCACCGCAGGGTGAGTTTAAGTGACGGCAGTGAGAGTGAAAACAGCTCTGGCTCGTCACCGCTACCCCATAATGATCCTCCGCCGTTGCTGAAAAACAGCAGTAACCAGATTGAAGTGAAGGGTCCTATAAAACAGGCGAAGatggacaaaaataaaaacattgactgTGACAAGATCTTTTTCCCCAGGCGTACTTGGATGAGCTGGTGGAGCTTCACAGAAGACTAATGGCACTGAGGGAAAGGCACATATTACAGCAGATTGT
>TCONS_00067425
AGAGAGCTCAATTAAAAGACCATGTCCGCCATCGAGCGTCTACAGTCCTCGGTGTCCTTATATAAACCAAATTCTCCATGAAATAGCATTATCCCGTGGCCTCGACAATGGCCAGTTCGGGTGCCGTTCAGGTGAAACTGGAACTCGGCCATCGTGCCCAGGTCCGAAAGAAACCCACCGTTGAAGGTTTTACGCACGACTGGATGGTGTTTGTCCGCGGACCGGAGCACAGCAACATTCAGCATTTTGTTGAGAAAGTCGTCTTTCATCTACACGAAAGTTTCCCGAGACCAAAAAGAGTGTGCAAAGATCCACCATATAAAGTTGAAGAGTCTGGATACGCTGGCTTTATCTTGCCTATTgaagtttactttaaaaataagGAAGAACCCAAAAAAGTGCGCTTCGACTACGATCTGTTCCTGCATCTGGAGGGTCACCCGCCTGTCAATCACCTGCGCTGTGAAAAACTCACCTTCAACAACCCCACGGAAGAGTTTCGCAGGAAGCTGCTCAAGGCCGGAGGGCAACGGGATCCTCACAAAAGATCTTCAGAGGACTCAAAGGTAATGGTAATGCAGGAAGGCTCCACTTCTTTGTTCGGGCCACATCTGAAGCTGCCCACATTACCCAGCAGCTCATTAACATTGACCTTCTCTGATGCCAAAAAGAGCAAGTCGTTCCCAGGGTCAAAGGACGGCTCCAAAAGCAGCAGTGCTCTTACAACTACCAACAACATCAGCAGCAGCTCCCTCAAG
>TCONS_00067426
ttttattattcagtTATTGCATACCTAAAGTAACTCCCAGCAAGTTACTGTAGATCAGTGttgctacccatatcaaacacacctgaaccaattaattagtacctgaacaccacgtgataattaccggcaggtgtgtttgatatgggttgcaaatgaaatctgcaggaaggtggatctccaggaacagggttggccacccctgctgtaaATTCTAGCAAATTGTTAACAGTAATCTAAAACCTAATGAAAACGTGTTGGTATTTATAGGCActggtgtattttttttattcattaaaacactccctaaacacaacctaaaaacactCTAAATATGTGTTTATATTCTCAATATAGCACCTATTAGTCTCTTATTGCTTAAAGTAGAAATGCTTTTCATGCTGAAGTCTGTCTTTTGCTCTTTTTGCAGTGTGCAAAGATCCACCATATAAAGTTGAAGAGTCTGGATACGCTGGCTTTATCTTGCCTATTgaagtttactttaaaaataagGAAGAACCCAAAAAAGTGCGCTTCGACTACGATCTGTTCCTGCATCTGGAGGGTCACCCGCCTGTCAATCACCTGCGCTGTGAAAAACTCACCTTCAACAACCCCACGGAAGAGTTTCGCAGGAAGCTGCTCAAGGCCGGAGGGGTGAGTGGTCGTTAATATAGCTTTAATGCAAGCTTACATGAttgattaaaaattataaaagagCAGAAGCTTCACTGCGCTAAATAAACAGGTTTTATGGGTCATTTGATGCTgcgtttctcaaccacgttgctggaggaccaccaacacagcatgttttggatgtctccttt

Function

symbol description
mllt3 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including immature eye; neural rod; segmental plate; sensory system; and tail bud. Orthologous to human MLLT3 (MLLT3 super elongation complex subunit).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-356 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including immature eye; neural rod; segmental plate; sensory system; and tail bud. Orthologous to human MLLT3 (MLLT3 super elongation complex subunit).

Ensembl:

ensembl_id ENSDARG00000006754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067424 False 2520 mRNA 0.46 13 18779555 18881358
TCONS_00069172 False 682 lncRNA 0.49 7 18780376 18810848
TCONS_00067425 False 758 mRNA 0.49 7 18811167 18877109
TCONS_00067426 True 827 processed_transcript 0.40 3 18826974 18827973

Neighbor

gene id symbol gene type direction distance location
XLOC_034628 NA coding downstream 5608 18762947 ~ 18773947 (-)
XLOC_034627 NA coding downstream 49081 18716760 ~ 18730474 (-)
XLOC_034626 trmt10a coding downstream 67001 18702534 ~ 18712554 (-)
XLOC_034625 nectin4a coding downstream 79191 18657008 ~ 18700364 (-)
XLOC_034624 coro1b coding downstream 123486 18617982 ~ 18656069 (-)
XLOC_034630 NA coding upstream 34184 18915542 ~ 18919985 (-)
XLOC_034631 NA coding upstream 109560 18990918 ~ 19003533 (-)
XLOC_034632 NA coding upstream 126397 19007755 ~ 19015887 (-)
XLOC_034633 CU972454.4 coding upstream 147469 19028827 ~ 19029537 (-)
XLOC_034634 fcer1g coding upstream 152525 19033883 ~ 19043401 (-)
XLOC_034617 CT027807.1 non-coding downstream 531864 18247037 ~ 18247691 (-)
XLOC_034615 CU457795.1 non-coding downstream 917015 17862425 ~ 17862540 (-)
XLOC_034610 CT030012.1 non-coding downstream 1133805 17641188 ~ 17645750 (-)
XLOC_034641 NA non-coding upstream 618622 19499980 ~ 19505267 (-)

Expression


Co-expression Network