XLOC_034625 (nectin4a)


Basic Information

Item Value
gene id XLOC_034625
gene name nectin4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18657008 ~ 18700364 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067416
ACATTTTCATTCACACCGTCGGAGGCATCAATGGAAATccgcacattttttttctttcttaacaTGTCGTAGGTGTTAAAATATTGACTGGATTAAAACTTTTTTCCCGCTTCCACACGAATTGCATGGATAAACGCTCACTTTCACCGAAGGATGTCAGTCTTTTTGAACTTGAAATGAATTAATCCTTAAtctccagtgtttttttttataatagtgtttttttttttttatttctttccttCTGtcttttggttgttgttgttgcactGGACGTCTTTATGTATGGGTATGTCCTCTTCTCCAATGTGTCCTGTGGGACTGGATCTATGATCGATGTAATTGAATCAGGAGTACCTTCTCTCAACATGGACGCTGTTTTTGGTATATTAATAATGAGCTTTACATTGACATCGACATACTGACAACTCGGGCTCAGGAGAAAAGTCTGAACTGGAGGATGATGAAGGCAGTTTCATATGTTCTTGCTGCGGTGATCTTCTGGAACTCAGCAGCCCGAGTAAGTGGAGAAGAAGAATACAGCTTTCTAGAGCCCTCTGAGTCCCCCTGGGATCTGTGGTCTTTGGCAGAGGGGGAAACTCGTTTGCCCTGTCGATTCAATGTGTCGGACAGTGAGATTACAGTGGTGCAGGTGCTGTGGATTCGAGAGAACAATGGAGTTGAAGAACAGATTCTTACTGCTCATTTCAAAGAAGGCCAGACAGAATTCCACTCTTCATATTCAGGGCGTGTACGATTCGAGACCAACAACCCAATAGCAGACTCTGCTCTGATTATCATGCGCACTCTTTCTGCAGATGAGGGCAAATACAAATGCAAAATCATTACCTTCCCCAGTGGAAACTTTGAGGCAGAGATAGTGCTCACAGTGTGGACTAAACCGATTTCCTCACTGAAATCGTACACCCTGATTGAAGGACAGTCATTTCGTCCGGCTGCTTCATGCCGTGCGATGGCAAAGCCAGTTGCAGGTCTGTCCTGGGACACAGAACTGCCGGGTCAGAGTCAGAACCAGAGCTCAGATGAGTCGGTCTCCTCAATCAAGTTTTCTCTCCACCCTTACCGCAGCATGAATGGACAGAAGCTGGACTGTCTGGTCTGGCATCCATCCCAAAAAGGCCCTGAGAGGATCTCTAATAAACTCATAGTACACTACCCTCCGAATGCAGTGATATCAGGCTACAAAGACGACTGGTTTGCTGAAATGCAAGGAGCCACGCTGCAGTGCAGTGGTGAAGGAAATCCAAAGCCTCACCTTTTCAACTGGacgagGAAAGATGGGGCTCTACCGGAGGGTGTGATTGTGGACGGAGGCACTCTGCTCTTTTCTAGACCCCTCCGCTTGGCAGATAAAGGACATTACATCTGCACCACCACCAATCTGGTGGGATCTGGAAAAACTGAGATCGAAGTAAAAATATCAGAGCCGACTCCTCCTATCGCCTCGGTGAACTTCATGCTGATGATCACCATCGCTGCTCTTGCTGCAGGGGTTGTTCTCACTCTTATCGGTGTGATCATTTGTGTTAACCGTCACTATAAACGCAAAAATAATCAACTGGCCATAGAGCTGGATGAAAAAAAGGTGGAAATCAACACTCTATCAAGACAGGCCTCGTTTAGGAGAGTGAACTCCAGCAGCACAGACAACAGATACTCgGAGGACAATCATCCTTTAAGAGTCGAAGGGACGATACGCACAAGTCTCTCCTCACTGGATCGTCCTCGCTCCAGGGATAGTCGTTCCACTCTGGGAGGAGTGGATTCACTGGGTCGGCCTGCAATTTATAACACGTCCagaagagggagagagaaaacgATAGACAGAGCTGACAGAGAATCTGCTCGACTGATGATGGAGTCTTTTGAGCAGGACAGTAACATGTCACAGGAAACCCATCTTCTCCCACCTCTCCACCCCTCTTCCTACACAATGGACCAGCCCGCAGACATGGTCAGATCTCGAAATGGCAATGCCATTCTGCCAGCAGAGGGGAGGCCGCATTCTGGAGGCAGTACCAGAGGGGGCAGCAGCAGGCATCATTCACCGTTAGTGACCATGTACCCGACTCTTACGGATGAAGAGGAAGGCTCTGTCAGCCCTACGGATTCGGGAGTCCACCGTGGTACACTGGAGCATGacgcttttgaaaatggcgacAGCGAGACCACGAGTTCTCAGATATCTGAAGCTCTGTCCAGTCATTTTGAGCGCACTAATGGCACACTACGACCCAAAGTGAAACCAAACAACATCATTCTGCCAGCCAATACAACCATTTACTTTCATCCACATAGTCCACCTATCCATAAAGCTCAGATCGTTTAGAGGGATTGTTTGGAAACGTCTTACATGAGAGGAGTCTTGGATTTATTGTTTGAAGTTCACTCTACACACAGCTGGACGATTACTAAGCCCAAAGTGGAACTTTTATATAAACGTTTTATATGAACTTATTCTCAAGGTGGCAAAAACTTGAACTCTATCAAGCCATCATATGACCAAACTCAAACCTGAATATCAATATCAGCATTACACAAAGAGGCTCTCAAATAGCGGCATAATCTATTCTGGATTCTGGAACTGGGACGTTTGAGTATTAATGAACTACAATATGTGTTTCAGATACAGATTAGCTGAAAATTGCCAGAGCTGAGCTTGTCTTTGACCAGGAATTaagatttatataaatatatatgtacagcggggaaaataTGTGTTAAACACACCATGCTTTTTCCTGGggataatatttctaaaggagctgttgacatattgaaccagattttagtaaaaacccaaacaatgcaaacataaaaataaaacaagcaaaaaaaaaagagttttgtgtaataacaatgaaatcacACAAAGAGAAAGTACTAAACTACTGAAACATATTAAGTAGACTTCaacaaagtgtaaaaatcttgattcTGTGGGTCtcttctatcaaatctgatctttaatttgtattctctattggattcaagtcaggtgattggctgggccattctacagcttgaatttctttctctgaaagcatttgagagtttccttgtctgtgttttgaatcattgtcttgctgaaatgttctggtttcatcttcatcatcttgctaatgtagatgttggaatgaagcaacaaaaattaatttacaatgaggaagggcagagggttactgaagaactactgagagatttcaaatCCTGTCTGGTCTTTCACTGCCTATCTACACCTCCTttcatgtattcaatacttttttcATGCGCCATTTTACtatgcataacttcatttgtaaacgaATACGTTTAGTTTTATTTGCATGTACTGATTTCTTTGGTTTTTACCAACATCCTGGTgacaatttcaagtcaacagcgtctttagaaatatgtttttgagGAAAATGGTGAtgcgttcaatacttatttttgctGCTGTATATATTACAACCTAATTCTTCACTTGAATTGCTGTTGAGGGAGAGAATGCTACAAGAACTGTTTTCTGGACAGTCAATCCTTCACTGTGACCGTATGTTTGTAATCCAGAGATggtgttttgaaatgtttttgaatatacataaataatatgtgtgcattttcactGTAAACTACCCGCTGCATGAATAGTATTATGAAGTATTGCattgacaaatttaaaaaaaaaaggttctttaTGTGTTCACAAACGCCATTGTTTACAACATTTATACTTCATTAGTTTCTAGTGCTTTAAATGTACTTAGGTTTAATAAGTGGGTTGTGTTATTGCAAGCTCCTGAGATATTTCTGTGACCTTTCTATatctacaaaaaatatataaaaccttACTGGTTCCTGATGGTTGGTGTTTTCAGTTCTCTACAGTGTATGAGGGTGGTGTTCATGTATGGCCAGTTATTAAATCCTCTTTAATAATG
>TCONS_00067417
ATGTGTGAACCTGCTGGTTCTTGGTTACTGGAAAACGAATCGCTGTTagtaacactgtttatttataataCGGTTATTTCCATCAATCTTTGTATagtaaatCCCTCTGAGTCCCCCTGGGATCTGTGGTCTTTGGCAGAGGGGGAAACTCGTTTGCCCTGTCGATTCAATGTGTCGGACAGTGAGATTACAGTGGTGCAGGTGCTGTGGATTCGAGAGAACAATGGAGTTGAAGAACAGATTCTTACTGCTCATTTCAAAGAAGGCCAGACAGAATTCCACTCTTCATATTCAGGGCGTGTACGATTCGAGACCAACAACCCAATAGCAGACTCTGCTCTGATTATCATGCGCACTCTTTCTGCAGATGAGGGCAAATACAAATGCAAAATCATTACCTTCCCCAGTGGAAACTTTGAGGCAGAGATAGTGCTCACAGTGTGGACTAAACCGATTTCCTCACTGAAATCGTACACCCTGATTGAAGGACAGTCATTTCGTCCGGCTGCTTCATGCCGTGCGATGGCAAAGCCAGTTGCAGGTCTGTCCTGGGACACAGAACTGCCGGGTCAGAGTCAGAACCAGAGCTCAGATGAGTCGGTCTCCTCAATCAAGTTTTCTCTCCACCCTTACCGCAGCATGAATGGACAGAAGCTGGACTGTCTGGTCTGGCATCCATCCCAAAAAGGCCCTGAGAGGATCTCTAATAAACTCATAGTACACTACCCTCCGAATGCAGTGATATCAGGCTACAAAGACGACTGGTTTGCTGAAATGCAAGGAGCCACGCTGCAGTGCAGTGGTGAAGGAAATCCAAAGCCTCACCTTTTCAACTGGacgagGAAAGATGGGGCTCTACCGGAGGGTGTGATTGTGGACGGAGGCACTCTGCTCTTTTCTAGACCCCTCCGCTTGGCAGATAAAGGACATTACATCTGCACCACCACCAATCTGGTGGGATCTGGAAAAACTGAGATCGAAGTAAAAATATCAGAGCCGACTCCTCCTATCGCCTCGGTGAACTTCATGCTGATGATCACCATCGCTGCTCTTGCTGCAGGGGTTGTTCTCACTCTTATCGGTGTGATCATTTGTGTTAACCGTCACTATAAACGCAAAAATAATCAACTGGCCATAGAGCTGGATGAAAAAAAGGTGGAAATCAACACTCTATCAAGACAGGCCTCGTTTAGGAGAGTGAACTCCAGCAGCACAGACAACAGATACTCgGAGGACAATCATCCTTTAAGAGTCGAAGGGACGATACGCACAAGTCTCTCCTCACTGGATCGTCCTCGCTCCAGGGATAGTCGTTCCACTCTGGGAGGAGTGGATTCACTGGGTCGGCCTGCAATTTATAACACGTCCagaagagggagagagaaaacgATAGACAGAGCTGACAGAGAATCTGCTCGACTGATGATGGAGTCTTTTGAGCAGGACAGTAACATGTCACAGGAAACCCATCTTCTCCCACCTCTCCACCCCTCTTCCTACACAATGGACCAGCCCGCAGACATGGTCAGATCTCGAAATGGCAATGCCATTCTGCCAGCAGAGGGGAGGCCGCATTCTGGAGGCAGTACCAGAGGGGGCAGCAGCAGGCATCATTCACCGTTAGTGACCATGTACCCGACTCTTACGGATGAAGAGGAAGGCTCTGTCAGCCCTACGGATTCGGGAGTCCACCGTGGTACACTGGAGCATGacgcttttgaaaatggcgacAGCGAGACCACGAGTTCTCAGATATCTGAAGCTCTGTCCAGTCATTTTGAGCGCACTAATGGCACACTACGACCCAAAGTGAAACCAAACAACATCATTCTGCCAGCCAATACAACCATTTACTTTCATCCACATAGTCCACCTATCCATAAAGCTCAGATCGTTTAG

Function

symbol description
nectin4a Predicted to act upstream of or within cell adhesion and viral entry into host cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NECTIN4 (nectin cell adhesion molecule 4).

GO:

id name namespace
GO:0046718 viral entry into host cell biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-55 Predicted to act upstream of or within cell adhesion and viral entry into host cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NECTIN4 (nectin cell adhesion molecule 4).

Ensembl:

ensembl_id ENSDARG00000077419

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067416 False 3947 mRNA 0.42 11 18657008 18700364
TCONS_00067417 True 1899 mRNA 0.49 11 18658605 18691637

Neighbor

gene id symbol gene type direction distance location
XLOC_034624 coro1b coding downstream 939 18617982 ~ 18656069 (-)
XLOC_034623 si:ch211-119e14.1 coding downstream 39821 18606798 ~ 18617187 (-)
XLOC_034622 dtx4a coding downstream 55802 18557939 ~ 18601206 (-)
XLOC_034621 msantd1 coding downstream 102405 18549669 ~ 18554603 (-)
XLOC_034620 rgs12a coding downstream 109588 18474563 ~ 18547420 (-)
XLOC_034626 trmt10a coding upstream 2170 18702534 ~ 18712554 (-)
XLOC_034627 NA coding upstream 16396 18716760 ~ 18730474 (-)
XLOC_034628 NA coding upstream 62583 18762947 ~ 18773947 (-)
XLOC_034629 mllt3 coding upstream 79191 18779555 ~ 18881358 (-)
XLOC_034630 NA coding upstream 215178 18915542 ~ 18919985 (-)
XLOC_034617 CT027807.1 non-coding downstream 409317 18247037 ~ 18247691 (-)
XLOC_034615 CU457795.1 non-coding downstream 794468 17862425 ~ 17862540 (-)
XLOC_034610 CT030012.1 non-coding downstream 1011258 17641188 ~ 17645750 (-)
XLOC_034601 CU179702.2 non-coding downstream 1276698 17358084 ~ 17380310 (-)
XLOC_034597 CU179757.1 non-coding downstream 1392699 17261616 ~ 17264309 (-)
XLOC_034631 NA non-coding upstream 290554 18990918 ~ 19003533 (-)
XLOC_034632 NA non-coding upstream 307391 19007755 ~ 19015887 (-)

Expression


Co-expression Network