XLOC_034624 (coro1b)


Basic Information

Item Value
gene id XLOC_034624
gene name coro1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18617982 ~ 18656069 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067414
ATCGATGCTTTAATTCTAGGCACATTCGCTGAGGAATTTACCTCCCATCCTCCTTTTTCCTTCAAAGCTATCGACgctcttttttctttattttaacttCCTCAAAAGCCCGATTTTGTAAAGTACCTTTGTGTATACTTCGAAAACAcataaatgtgcttttatttccGTTGGTGATATGGATTAATTTGGCGATGCTTGCTAAAATTGACTGGATGTAATTGCTCCACCTGACCATGCAGAATATCCAGAACAACACGCTGCAAGGATTAGTGTTGTTTACATAGATTACTGCGTTTATACACAGCGTATATTTACACATCAAATCGCTTTCTTAATTTTAGCACATCTTCCAAGAAAgggaaaagagaagagaagaaagaAGGAAACCCCAAAGAGAGTCATGTCCTTCAGGAGGGGTGTTGTGAGGCAGAGTAAGTTCAGGCATGTGTTTGCTCAGGCCTGGAAGGCTGAGCACTGTCTTGATGATGTCAGAGTGTCCCGTGTGACGTGGGACGGCCCTCTGTGTGCTGCCAATCCCAAGTTCATCGCCGTTGTCATTGAGGCTGGAGGAGGTGGAGCCTTTCTTGTGTTGCCACTCGCCAAGAGCGGACGAGTGGACCAGAACACGCCGACAGTCTGCGGCCATGCTGCGCCAGTGCTGGATGTGCAGTGGTGTCCACATGATGATAATGTCATCGCCAGCGCTTCAGAGGACTGCACTGTCAAGATCTGGCAGATTCCTGATGGAGGTCTCATGTCTCCCATGTCCGAAGCTGTGGTGACTCTGGAGGGTCACAGTAAAAGAGTGGGCATCTTAGCCTGGCATCCGTCTGCACTGAATATCCTGTTGACTGCAGGATGTGATAATGTGCTTTGTGTGTGGGACGTGGGCACTGGAGAGCTGGTTTACCAGCTAAGTGATGCCCATCCAGACCTGATCTACAGTGTGAGCTGGAACCGCGAGGGAAGCATCCTGTGCACCACCTGTAAAGACAAAGCCTTGCGAGTCATTGATCCCCGGCGTGGGACTGTCCTAAAGGTTCGAGAGAAGGCTCATGAGGGCACCAGGCCGATGAGAGCTGTATTTCTGGCTGATGGCAAAATCCTGACAACCGGCTTCAGTCGCATGAGTGAGAGACAGCTTGCCCTCTGGGACACGAGAGATCTCTCAGAGCCCATGGCCACTCAGGAAATGGACACCAGTAATGGAGTTCTGCTTCCATTCTATGACCCAGACACCAACATGGTTTACTTGTGTGGCAAGGGGGATTGTACCATTCGTTACTTTGAGGTGACGGATGAGTCACCGTATGTTCATTTTCTGAGTCTGTACAGCAGTAAGGAGCCACAGAGAGGTGCTGGTTTTCTAAGCAAGCGAGGAGTGGATGTCAACAAGTGTGAAATAGCAAGGTTCTATAAGCTGCATGAGAGGAAGGTTGAGCCCATATCTATGACTGTGCCAAGGAAGTCTGACCTGTTTCAAGGGGATCTGTACCCGGATACAGCGGGATTGGAACCGGCTCTTCTGGCGGAGGATTGGATAGCAGGACAGGATGCTCCTCCAGCCCTCGTTTCCCTCAGTGGAGGCTATACAGCTCCTCCATCCAAAGGCGGGACACTGAGAGGACGACCCAAACTGCTCTCTCCGACTAATACTAGTCCCACCAGCACTACTGCACCAGCAAACCCTGTGACGGTTGAGATGGAAAGCGAGGGTTTGAGCCACGGGCGAGGTGGAAGAGATGTAGATGGTGGGATAGAGAGAGTGAAGAAAGAGGAGGACCAGCTTTCAGACATCCTGACGGAGGTCCGGGCTCTGCGCGCTCTGGTTCTGGCTCAGGGTCACAGGATCGATGTTCTGGAACGGCAGCTCGCGCGCATCGAGGATGGCGAAGTGTGATGGAAAAAACCACAAACACATCACGACACATAGCCTTATTACCCAGATTCAAAGAGCTTCACTGAAGGcttatgggaaatgtagttccATTACTAGTGACGTAGAGATACAGAGAGACCTAACTGAGCTTTATTGATTACAAATGCACTGATACTTAATATGGTAAATGCTGCTCGTTTTGTGCTTCTAATAGGGCTGTTTCATCAGGTACTTGCTTCTGCTAACTACAGATACTTAATTCTGAATTTGGTTATGTCGACGTTTGCATAAACATGCAAAGTTTCAATGAAAAGCAGACTTGATGGTCTCTAGTAGCGTGCATTAAGACGGCATCTAACGAATGCTTCTGCTTAATAACAGTAGCGTGAAACCTTCAGGAATTGCTATAATCCAACATGCTGAATTAATTTCTTGCTTCGGCTAAAGTTTGATGGTGCTTCTCAACGTAGATCGACCAGCACTGTTCCTCTCTTCCATTTTACTGTATGTCTTAACACATGTAGCATTGATTTTTGAATGCCGGTAGTCAgagttttgtgtgtgcgtgtgtgtgtagcaTGTGATAGAAACTGTACTTGATGTTGAATGAAATTTGTGAAGGATCCATATACCGGAGCAAGATAAGCTTGTAGagcaaacagcaaaaaataataatacagatgTAGAACGATTAAAAATGTCCAGGTTACATTcaaaaaacatgctttttttcttGCTGTTGAGACTTTCAAATAATTGTAAGCACATGTTTTGCTTTTTACTTCTTAATTTATTCTTGTTAAATTCCTAATACTTTAATTTTGGAAGTCGTTTTACCTTATATTACAGTTTAAATGCTCTTTTTTTAACATGTAAACAggataatgtttaatttaaagtgCACCTATGATTAAAATCAtcctttgtaagctgtttggacagaactatagtgtaggtatagtgtccacagtcatattggagtgatagaaacacaagaagtctctttttttatatttcctgacgttaaaatatgATCCAAATCCCTTTCATTTttaggcccaccgcaacgtgacagAGAAGCGTGGTTTTCCCCACTCACTGAATTGAATGACAGCCGCTTTTTAACATGTCTCCGCTTATAAACATATCCACGAGAGAGAACCTGTGCTAAGCAACTAGGATTAAAAGATccgttcagctctctgtgatcatctgtaCCTCAAGAATAAGtttaacaagtttaaaacatttttagctCGGTGCATGTttgaaataaatacagtaaaattgatatgtaattcatcaccacagccgcatgtcagtacaattataaaagaagatactTCTATCCTGGCTTgtagatgttaaatcaggtttattttgtacattacatAACATATGTCCATATAgaagtggatattaatgtgtatcctgtcacactTACCATGTAAAAACATGCTTTAAACATTGTAACAACATTTTGTgtgactcatctttgcagaaaaGCTTGAATtatctccacaacaaatacatcaaataatcattgggaaagttcttactttaGTATTCCTCACTTACGGTTTGTGAGATCTGCTTGCTtattgtctgtcactgtgctgtttatttaatGCAGCATGAGATGAAGACACACATCAAAGCAATAGGGAGTGATCTCTGTGGCTCTGATGGCATGTGGTAAGGTTTGGTAgggagaactagctcatttgaattaaaggcacaggcaacaaaaacagctacaatgtgctAAGAGCTGTACATTCTAATGTTcataaaggtataataaataatctaatgggtgGGTAAAACTGAAaccttacagacacattctataGACACTAAAGTTTTAtctaaaatcttgaaaaaggggtaaaatagctgCCCCTTAAGGTGGTACAGTATGAGCAcctatacagtacagtatgtgataGTGTACAATCTCTTTAGGCAAAGACAAAACACTAGATTCAGatctttttattgacattttaaatatcAATAACACTGACTTCAAAAAGATTTGGAAAATCAAAGCAATCCAAAAATAACATTATGGAAAgtattttaatttgacattttattttattattttttgtccaCTTATTTACAACTAATTATCAATATTTCTGACATTCCAATGTTTTGAGACACTATAAATATTACAGGCTGACCAAATAATATTTGCTCTGAAAACAAGCTCTCTTTTTCTATTCAATTTACTCGTATTCTTGTCTTTCATTTGTGTCACCTGGATATGTCATTGCCAGTTTTGTTTAGATTCATACCTCTTAATGAATAACTGTTTTATTCCTGTTTGATTGACTATGAAATCTAATAGTAGAACGATGTGGTGTTTCTAGCTTTAGCTGGTGGTGTTTTTGTATTCGTTTTGTTTTAAGTTGCTCTTTAATCATTGGCACTACAATCAGGGAAGACTCAAAGCGAGGGTCGACTCATGCTTCTCTGCGGATGATTTTCGTTATGTCTAGCTGTACATGTTGTAAATTATCTAAGGACCCATTTACTTCAAACTTAAGTGCTAACTTACACTGTTCtttttaataaatgacatttgcCCATTTC
>TCONS_00067415
GAGGAGGTGGAGCCTTTCTTGTGTTGCCACTCGCCAAGAGCGGACGAGTGGACCAGAACACGCCGACAGTCTGCGGCCATGCTGCGCCAGTGCTGGATGTGCAGTGGTGTCCACATGATGATAATGTCATCGCCAGCGCTTCAGAGGACTGCACTGTCAAGATCTGGCAGATTCCTGATGGAGGTCTCATGTCTCCCATGTCCGAAGCTGTGGTGACTCTGGAGGGTCACAGTAAAAGAGTGGGCATCTTAGCCTGGCATCCGTCTGCACTGAATATCCTGTTGACTGCAGGTAAGCTCCTCTTCCTCTGTATTTATACTTTCCCGGCTCACAGGGCTTGGGTTAAGTCTGTTCTGGCACACTCTATTTTTGGCCTGTGT

Function

symbol description
coro1b Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Predicted to be located in cytoskeleton. Is expressed in nervous system and neural tube.

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040123-3 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Predicted to be located in cytoskeleton. Is expressed in nervous system and neural tube.

Ensembl:

ensembl_id ENSDARG00000008660

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067414 False 4483 mRNA 0.41 11 18617982 18656069
TCONS_00067415 True 380 lncRNA 0.54 3 18643014 18650779

Neighbor

gene id symbol gene type direction distance location
XLOC_034623 si:ch211-119e14.1 coding downstream 795 18606798 ~ 18617187 (-)
XLOC_034622 dtx4a coding downstream 16776 18557939 ~ 18601206 (-)
XLOC_034621 msantd1 coding downstream 63379 18549669 ~ 18554603 (-)
XLOC_034620 rgs12a coding downstream 70562 18474563 ~ 18547420 (-)
XLOC_034619 znf16l coding downstream 147019 18462242 ~ 18470963 (-)
XLOC_034625 nectin4a coding upstream 939 18657008 ~ 18700364 (-)
XLOC_034626 trmt10a coding upstream 46465 18702534 ~ 18712554 (-)
XLOC_034627 NA coding upstream 60691 18716760 ~ 18730474 (-)
XLOC_034628 NA coding upstream 106878 18762947 ~ 18773947 (-)
XLOC_034629 mllt3 coding upstream 123486 18779555 ~ 18881358 (-)
XLOC_034617 CT027807.1 non-coding downstream 370291 18247037 ~ 18247691 (-)
XLOC_034615 CU457795.1 non-coding downstream 755442 17862425 ~ 17862540 (-)
XLOC_034610 CT030012.1 non-coding downstream 972232 17641188 ~ 17645750 (-)
XLOC_034601 CU179702.2 non-coding downstream 1237672 17358084 ~ 17380310 (-)
XLOC_034597 CU179757.1 non-coding downstream 1353673 17261616 ~ 17264309 (-)
XLOC_034630 NA non-coding upstream 259473 18915542 ~ 18919985 (-)
XLOC_034631 NA non-coding upstream 334849 18990918 ~ 19003533 (-)
XLOC_034632 NA non-coding upstream 351686 19007755 ~ 19015887 (-)

Expression


Co-expression Network