RNA id: TCONS_00067416


Basic Information

Item Value
RNA id TCONS_00067416
length 3947
RNA type mRNA
GC content 0.42
exon number 11
gene id XLOC_034625
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18657008 ~ 18700364 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTTCATTCACACCGTCGGAGGCATCAATGGAAATccgcacattttttttctttcttaacaTGTCGTAGGTGTTAAAATATTGACTGGATTAAAACTTTTTTCCCGCTTCCACACGAATTGCATGGATAAACGCTCACTTTCACCGAAGGATGTCAGTCTTTTTGAACTTGAAATGAATTAATCCTTAAtctccagtgtttttttttataatagtgtttttttttttttatttctttccttCTGtcttttggttgttgttgttgcactGGACGTCTTTATGTATGGGTATGTCCTCTTCTCCAATGTGTCCTGTGGGACTGGATCTATGATCGATGTAATTGAATCAGGAGTACCTTCTCTCAACATGGACGCTGTTTTTGGTATATTAATAATGAGCTTTACATTGACATCGACATACTGACAACTCGGGCTCAGGAGAAAAGTCTGAACTGGAGGATGATGAAGGCAGTTTCATATGTTCTTGCTGCGGTGATCTTCTGGAACTCAGCAGCCCGAGTAAGTGGAGAAGAAGAATACAGCTTTCTAGAGCCCTCTGAGTCCCCCTGGGATCTGTGGTCTTTGGCAGAGGGGGAAACTCGTTTGCCCTGTCGATTCAATGTGTCGGACAGTGAGATTACAGTGGTGCAGGTGCTGTGGATTCGAGAGAACAATGGAGTTGAAGAACAGATTCTTACTGCTCATTTCAAAGAAGGCCAGACAGAATTCCACTCTTCATATTCAGGGCGTGTACGATTCGAGACCAACAACCCAATAGCAGACTCTGCTCTGATTATCATGCGCACTCTTTCTGCAGATGAGGGCAAATACAAATGCAAAATCATTACCTTCCCCAGTGGAAACTTTGAGGCAGAGATAGTGCTCACAGTGTGGACTAAACCGATTTCCTCACTGAAATCGTACACCCTGATTGAAGGACAGTCATTTCGTCCGGCTGCTTCATGCCGTGCGATGGCAAAGCCAGTTGCAGGTCTGTCCTGGGACACAGAACTGCCGGGTCAGAGTCAGAACCAGAGCTCAGATGAGTCGGTCTCCTCAATCAAGTTTTCTCTCCACCCTTACCGCAGCATGAATGGACAGAAGCTGGACTGTCTGGTCTGGCATCCATCCCAAAAAGGCCCTGAGAGGATCTCTAATAAACTCATAGTACACTACCCTCCGAATGCAGTGATATCAGGCTACAAAGACGACTGGTTTGCTGAAATGCAAGGAGCCACGCTGCAGTGCAGTGGTGAAGGAAATCCAAAGCCTCACCTTTTCAACTGGacgagGAAAGATGGGGCTCTACCGGAGGGTGTGATTGTGGACGGAGGCACTCTGCTCTTTTCTAGACCCCTCCGCTTGGCAGATAAAGGACATTACATCTGCACCACCACCAATCTGGTGGGATCTGGAAAAACTGAGATCGAAGTAAAAATATCAGAGCCGACTCCTCCTATCGCCTCGGTGAACTTCATGCTGATGATCACCATCGCTGCTCTTGCTGCAGGGGTTGTTCTCACTCTTATCGGTGTGATCATTTGTGTTAACCGTCACTATAAACGCAAAAATAATCAACTGGCCATAGAGCTGGATGAAAAAAAGGTGGAAATCAACACTCTATCAAGACAGGCCTCGTTTAGGAGAGTGAACTCCAGCAGCACAGACAACAGATACTCgGAGGACAATCATCCTTTAAGAGTCGAAGGGACGATACGCACAAGTCTCTCCTCACTGGATCGTCCTCGCTCCAGGGATAGTCGTTCCACTCTGGGAGGAGTGGATTCACTGGGTCGGCCTGCAATTTATAACACGTCCagaagagggagagagaaaacgATAGACAGAGCTGACAGAGAATCTGCTCGACTGATGATGGAGTCTTTTGAGCAGGACAGTAACATGTCACAGGAAACCCATCTTCTCCCACCTCTCCACCCCTCTTCCTACACAATGGACCAGCCCGCAGACATGGTCAGATCTCGAAATGGCAATGCCATTCTGCCAGCAGAGGGGAGGCCGCATTCTGGAGGCAGTACCAGAGGGGGCAGCAGCAGGCATCATTCACCGTTAGTGACCATGTACCCGACTCTTACGGATGAAGAGGAAGGCTCTGTCAGCCCTACGGATTCGGGAGTCCACCGTGGTACACTGGAGCATGacgcttttgaaaatggcgacAGCGAGACCACGAGTTCTCAGATATCTGAAGCTCTGTCCAGTCATTTTGAGCGCACTAATGGCACACTACGACCCAAAGTGAAACCAAACAACATCATTCTGCCAGCCAATACAACCATTTACTTTCATCCACATAGTCCACCTATCCATAAAGCTCAGATCGTTTAGAGGGATTGTTTGGAAACGTCTTACATGAGAGGAGTCTTGGATTTATTGTTTGAAGTTCACTCTACACACAGCTGGACGATTACTAAGCCCAAAGTGGAACTTTTATATAAACGTTTTATATGAACTTATTCTCAAGGTGGCAAAAACTTGAACTCTATCAAGCCATCATATGACCAAACTCAAACCTGAATATCAATATCAGCATTACACAAAGAGGCTCTCAAATAGCGGCATAATCTATTCTGGATTCTGGAACTGGGACGTTTGAGTATTAATGAACTACAATATGTGTTTCAGATACAGATTAGCTGAAAATTGCCAGAGCTGAGCTTGTCTTTGACCAGGAATTaagatttatataaatatatatgtacagcggggaaaataTGTGTTAAACACACCATGCTTTTTCCTGGggataatatttctaaaggagctgttgacatattgaaccagattttagtaaaaacccaaacaatgcaaacataaaaataaaacaagcaaaaaaaaaagagttttgtgtaataacaatgaaatcacACAAAGAGAAAGTACTAAACTACTGAAACATATTAAGTAGACTTCaacaaagtgtaaaaatcttgattcTGTGGGTCtcttctatcaaatctgatctttaatttgtattctctattggattcaagtcaggtgattggctgggccattctacagcttgaatttctttctctgaaagcatttgagagtttccttgtctgtgttttgaatcattgtcttgctgaaatgttctggtttcatcttcatcatcttgctaatgtagatgttggaatgaagcaacaaaaattaatttacaatgaggaagggcagagggttactgaagaactactgagagatttcaaatCCTGTCTGGTCTTTCACTGCCTATCTACACCTCCTttcatgtattcaatacttttttcATGCGCCATTTTACtatgcataacttcatttgtaaacgaATACGTTTAGTTTTATTTGCATGTACTGATTTCTTTGGTTTTTACCAACATCCTGGTgacaatttcaagtcaacagcgtctttagaaatatgtttttgagGAAAATGGTGAtgcgttcaatacttatttttgctGCTGTATATATTACAACCTAATTCTTCACTTGAATTGCTGTTGAGGGAGAGAATGCTACAAGAACTGTTTTCTGGACAGTCAATCCTTCACTGTGACCGTATGTTTGTAATCCAGAGATggtgttttgaaatgtttttgaatatacataaataatatgtgtgcattttcactGTAAACTACCCGCTGCATGAATAGTATTATGAAGTATTGCattgacaaatttaaaaaaaaaaggttctttaTGTGTTCACAAACGCCATTGTTTACAACATTTATACTTCATTAGTTTCTAGTGCTTTAAATGTACTTAGGTTTAATAAGTGGGTTGTGTTATTGCAAGCTCCTGAGATATTTCTGTGACCTTTCTATatctacaaaaaatatataaaaccttACTGGTTCCTGATGGTTGGTGTTTTCAGTTCTCTACAGTGTATGAGGGTGGTGTTCATGTATGGCCAGTTATTAAATCCTCTTTAATAATG

Function

GO:

id name namespace
GO:0046718 viral entry into host cell biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-55 Predicted to act upstream of or within cell adhesion and viral entry into host cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NECTIN4 (nectin cell adhesion molecule 4).

Ensembl:

ensembl_id ENSDART00000112359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067415 lncRNA downstream 6229 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067396 lncRNA downstream 843594 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067389 lncRNA downstream 948378 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00068673 lncRNA downstream 1080911 17575791 ~ 17576097 (-) True XLOC_034605
TCONS_00067366 lncRNA downstream 1276698 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00067420 lncRNA upstream 7619 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00069170 lncRNA upstream 16396 18716760 ~ 18723012 (-) False XLOC_034627
TCONS_00069171 lncRNA upstream 62583 18762947 ~ 18773947 (-) True XLOC_034628
TCONS_00069172 lncRNA upstream 80012 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00069173 lncRNA upstream 215178 18915542 ~ 18919985 (-) True XLOC_034630
TCONS_00067414 mRNA downstream 939 18617982 ~ 18656069 (-) False XLOC_034624
TCONS_00067413 mRNA downstream 39821 18606798 ~ 18617187 (-) True XLOC_034623
TCONS_00067411 mRNA downstream 55802 18558264 ~ 18601206 (-) False XLOC_034622
TCONS_00067410 mRNA downstream 58347 18557939 ~ 18598661 (-) False XLOC_034622
TCONS_00067409 mRNA downstream 102405 18549669 ~ 18554603 (-) True XLOC_034621
TCONS_00067418 mRNA upstream 2170 18702534 ~ 18711482 (-) False XLOC_034626
TCONS_00067419 mRNA upstream 4749 18705113 ~ 18712539 (-) False XLOC_034626
TCONS_00067421 mRNA upstream 8048 18708412 ~ 18712543 (-) False XLOC_034626
TCONS_00067422 mRNA upstream 9820 18710184 ~ 18712482 (-) True XLOC_034626
TCONS_00067423 mRNA upstream 21183 18721547 ~ 18730474 (-) True XLOC_034627
TCONS_00067412 other downstream 87675 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 409317 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 794468 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 1011258 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067372 other downstream 1240916 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067426 other upstream 126610 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067455 other upstream 1255714 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 3122999 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 3130322 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 3136312 21836676 ~ 21836866 (-) True XLOC_034675

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_00700134_00715188.mRNA True 2994 mRNA 0.43 10 CI01000344 698967 ~ 715188 (-)