RNA id: TCONS_00067411


Basic Information

Item Value
RNA id TCONS_00067411
length 4957
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_034622
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18557939 ~ 18601206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGACGCACGCAAACAATCGAAGAATCCTGCACATTCCTTACTAGAATAAGAATAACATTTAAATGTCTTTACATGGCGGTCGGCGAAACGAGCCATGCCGTGTAGGAGACCTACAACAGCGCATTGCGTCGACTGTGCGTTTCAAAGCAACATAATGCAATAATTCAATTCGCATTttcctcagagagagagagaaaaaaatctggGACTATTGTTATATCGCACGGATACTTTTTGCTCAAGTTAAGATGGATTCGCCCAAGGAATTACCTCCTACTTCAATGATTTGAATGCAAACGAGTAAACACGAACGCTGTCTTATTGGTATGAGATGTTGTTAGCCTCGGCCGTGGTCGTCTGGGAATGGCTGAACGAGCACGGGCGCTGGCGACCCTACAGCCCAGCGGTGTCCCATCACATCGAGGCGGTGATCCGCAGCGACCCTCGCGGCGCCGGGAGCGTGGTGCTGGGCCAGGTCGACTCACGTCTATCGCCGTACATCATTGACCTGCAGTCTATGCACCAGTTTCGGCAAGACACCGGTACACTAAGACCTGTGCGGCGAAGTTTCTATGATCCACGGTCGGCTCCAGGCCAGGGTTGGGTGTGGGAATGGGAGAACGACTCTGGTTCATGGACGCCGTACGACACCGAGGTGAGCATCGCCATCCAGGCGGCTCGGGACCGGCAGCAGCCCTGGCTGGACTTAACGCCGCTGGGCTTCTGCTACCTCATAGACCTGCAGAGTATGACACAGATTAATGGACAGACGCAGCGGCGCCGGCGCATCCAGAGGCGCTCAGACTTGGCATACCCCCTAGTCTCTGGCCCACTTCCTAAACCACATGCGTGGTCATCCGCTGGAAGTGGTGGACTGTTGGGTGTGGGCGTTTCAGGGGTCAGTGGAGGGAATGGCAGTGCCTATCCCAGTGGAGCGCTCCCAGCTTCTGCTATTACTTCACTGGGTCAGCCGTGTTCCTGCCAGCAGTGTATGTTAGTCTTAGGTGTCAAGACCCCAAGCATGGCACAAACTCTTGGGCGGAAACCCCCGCCAATACCCAAGCCACCAAGTCCCAAAGCTCCATCAAGAGGACACTCATACTCGCTAACCCTGCCTCACCCTCCTTCCCTTTCCCGAGTCCTCTCGCCACATAGGAACTCCACTTCGGGTGCTAGCGGAGGCTTCGGACACTCCCTCTCCCTGTTGGGCTCAGCCACTGCCGCTTTGTCCATATCCTCCAACCGTCCTCCCCCACCTACTGTACCGCCACCTCCGCCCCCATCAACCACACCTCATACCACCTCCATGGCCAACCCTACAGCGCCTACACCCTCTAGCACCCTTATATCTACAGCGACCACCTGTGCTCCCACGCCCTCTGCTCGTGTTCTTGGTCCTGTGTCGACAGCGTCAGCAGCTTGTGCCGCCCCGGTGCCGCCTCGCAGTAGTCTGGCTGGTCTTAGCCGTCCCGCCCTACAGAGAATCGCAATGGCACAGTCACGGGCACTCATTGCATCAGGAGTCCCCACCGTCCCTGTGAAGAACTTAAATGGATCCAGTCCTGTTCATCCCGCTCTGGCAGGAATCACTGGTATTCTGATGAGCGCTGCTGGACTGCCGGTCTGCTTGACCCGCCCACCTAAACTGGTGCTCCACCCTCCACCTGTCAGCAAGAGTGACATCAAACCTGTGCCAGGCCTCGGCCACTGCTGCCGGAAAACCACTAAAAAACAAGCCCGCAAAGGTAGGACTTCAGAAGAAGTTGTTAGGCGGTATCTTCAGAAAGTCCGCAACCCACCAGAGGAGGACTGCACAATTTGCATGGAGTCTCTGTGTGGGCCGTCCGGCTATAAAGGACCAGGCGTGGGTGGTATTTCTCGGGCCGAGTCAGTGGGCCGTCTGTCTCAGTGCGGGCATCAGTACCACCTGCAGTGCCTGGTGGCCATGTACAACAACGGCAACAAGGACGGCAGCCTTCAGTGTCCCACCTGCAAGACCATATACGGTGTCAAAACCGGCAACCAGCCACCAGGCAAGATGGAGTACCACGTCATTCCACACTCGCTACCCGGACACCCCGACTGCAAAACCATTCGGATTATCTACAACATCCCCCCTGGCATTCAGGGTCCGGAGCATCCAAACCCCGGGAAACCCTTCACCGCTCGTGGATTTCCCAGACACTGCTACCTCCCTGACAGTGAGAAAGGCCGTCTGGTGTTGAAGCTGTTGCTGGTTGCCTGGGACCGCCGGCTGATCTTCTCGGTGGGCACATCCAGCACCACAGGCGAGACGGACACAGTCATTTGGAACGAGGTGCATCACAAAACCGAATTCGGCTCCAATCTGACGGGCCACGGTTACCCTGACTCGGGCCACCTGGATAACGTCCTGGAGGAGCTGCGGGCGCAGGGCATCACTGAGGAGGAGTGTCTGAGGGACTGAAAACCTTGAAAAGTCCAACCACAAAGACTGAATGTTTCTTTCTGTGTTAGTGTTGCCAAATCTGAATTCAATTCCCAGCTCTTGTTTCTCAAATGACGCTTTTGGAAATCAAGGACTCTAAAAGGTTTATAATTCATCATcctcaattattattattcttttttttgtcaGTGATATTAGCCCTCCTATTGCTAAAGAAATCTGAGCCTGTCAGAAGTGGGCTGCGAGAGCTGTAATTAACAAACAATATTGCACTGTGCGCTATTGTGGTGGAGCCGTTCTCTCTTTGAAAAACTCGAAGGACCTGATAGAGTTCTCCCCACAGAAACCAGACTTGCTGCAGTGCAATTTTGTCGCTAGCGGGCCGCAGGCACGGAACAGTGTCTGCTCAACCATTTATTGTATTGTAGTTCTGTGAAGGATACGCAAAACAAAGGTACATCTGTGCATGTAGTTGTATCATGTGGCGCAGAGACGTTTATGTCCTTGGTGTAACCGAGGCGGCTAACTTTGAAGCTCCAGTTGCAGTTTTAGATGCCGGAACGTGAATGTTTACTGCCCCATAGTGGCACTTGTTAACATATACATTCCAGTAATAACCATGGTATTTATTTGACCACATAGTTTTTTCGAAATGTTTGCAGTATTTACATTAACCACTTATATTTGTACTTATTTTATTGTATCTTACGTTATTTTATATCGTCGAAACGAGAAACCTGTACTGTCATCGATTTTTGGGATGGAAACCAGTCTCTGTTTAGGGACGTTCAACTCAACCTGATTTGTTAAtcagtattaaaaaaatatacattgagCCAAGGTGATTCTGGTGGCCAACAGAGGAACAACGCACAAATTTagtgaaaataaacttttttttttttgggtgattGGATTTGCCGTCGGAGATGAAGGCCCTTGTCCACACGAACATGGGTATTttcaaaaccacactttttttctACATTGTTTTGCTGTGTGTCCACACGAAAACGGAGTATCGAGTGAATAAATTCTAAACAGTCTGAAAACCATGGTTGAAGTTTTTTTCGCCTCATGACAGCATCCatgctgttttctcctttctgattggccaaggtgactgggttcacaccaaatgcggaAGATGCAAATGAGGCAAAATTCTGCACATTCGTGGAAAACACAAGTATTTCGTGTCGTATGCCATTTGTGCAAATACTtaattctttgtttgttttgaaccCATCATAAGTGTTATTATCGCCCCCTGTTGGTTCGGCATGTCCATAACATTCTTCAATGTGCGTATTTTGCATTGTCAtgtggacagttttttttttatttttttggtgtttgGATTTGCTGTCGGAAATGAAGGCCTTGTCCACACGAAcactggtattttcaaaaccaCACGAAAAAGGAGTATCAAGTGAATGAATTcgaaactttctgaaaactccaACCAAGGTGAAGATTTTCCTAAACTCCAGCTACAGTGTGGTCGAAGTTTTGTTTCGCCTCATGATGGCGTCCATGCTTTTTTGCTCCTTGCTGATTGACCAAAGTGTCTGGGTTCACACCGAACGCGGAAGATGCAAATGAGGCAAAATTCCGCACATTCCTGGCAATTGCGTCGCATATTTCATGTCATTCACCCTTGAGGCGGTAATCCACCTCTGTTCTCATGTTTGCATTGATTTGTATGTGATTTGTGCAACTACTTAATTCTTCGTGTGTTGTGAATCAAGCATAAAAGTGTGATAGTTGCCCCCTGTTGGTGTGgcataacgtttttttttttaacaaaagtgGGGAAAACTCCCATGTacgtgtggacatggcctaaaaAGTTACGAACAGGGCGAAATCTGCGCGATAGTACTTTTAATATGATGTCATCTGTTTCGATTCTCCAAAATTGAAGTGGTCTGCCTTTAAAGTGGTTACTAACGTACCCTGTTGACAAATCCTGTGGACTAGCTCTCTCCGGTTGCCTTTCTGGTCGGTACGCGGTAGGTCTGTGATGGACCTGTTTACAAAGCTGTTGATGAAGCGTCTGCATGTATGTACATGCAAATGTGTAAGCTTACATTTATAGTTGATGTGCtgtatgtatgtgttttatgtacaCAATTATTTTCGCCCTGCATCCAAAAGCATGTTGTGGAAGTAAATGAGTATTTCTTTTTCTTGtatcattttttataatatactTTGAATTGGtttaactctgttttttttttcttcttataagCTATTAGGGTTTTTTCCACTGtgaagtttttaattttcttttattgcACTTGTATGATTTGATTTATTGTCCAGCCAAGTTCCTCATGATAGTTGCTATGGAGACAACAGTGAAAATGGCATCGCTGCCAGGACGAAAACTGTGAAGACAAAGAACGGAGCTAGGAGAACTAATGTTGctgtataatataaaatgtacaaaacaacTCTTGCATATTAAATAGCTGCTGGAatactgaataaatattaaaggTACTCAAAAGGAAA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-59 Predicted to enable transferase activity and zinc ion binding activity. Predicted to act upstream of or within Notch signaling pathway and protein ubiquitination. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDART00000111636

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067396 lncRNA downstream 744850 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067389 lncRNA downstream 849634 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00068673 lncRNA downstream 982167 17575791 ~ 17576097 (-) True XLOC_034605
TCONS_00067366 lncRNA downstream 1177954 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00069169 lncRNA downstream 1302653 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00067415 lncRNA upstream 41808 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067420 lncRNA upstream 106777 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00069170 lncRNA upstream 115554 18716760 ~ 18723012 (-) False XLOC_034627
TCONS_00069171 lncRNA upstream 161741 18762947 ~ 18773947 (-) True XLOC_034628
TCONS_00069172 lncRNA upstream 179170 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00067409 mRNA downstream 3661 18549669 ~ 18554603 (-) True XLOC_034621
TCONS_00067406 mRNA downstream 10844 18474563 ~ 18547420 (-) False XLOC_034620
TCONS_00067407 mRNA downstream 12749 18474565 ~ 18545515 (-) False XLOC_034620
TCONS_00067408 mRNA downstream 49449 18500818 ~ 18508815 (-) True XLOC_034620
TCONS_00067404 mRNA downstream 87301 18462242 ~ 18470963 (-) True XLOC_034619
TCONS_00067413 mRNA upstream 5592 18606798 ~ 18617187 (-) True XLOC_034623
TCONS_00067414 mRNA upstream 16776 18617982 ~ 18656069 (-) False XLOC_034624
TCONS_00067416 mRNA upstream 55802 18657008 ~ 18700364 (-) False XLOC_034625
TCONS_00067417 mRNA upstream 57399 18658605 ~ 18691637 (-) True XLOC_034625
TCONS_00067418 mRNA upstream 101328 18702534 ~ 18711482 (-) False XLOC_034626
TCONS_00067401 other downstream 310573 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 695724 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 912514 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067372 other downstream 1142172 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067360 other downstream 1293955 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067426 other upstream 225768 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067455 other upstream 1354872 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 3222157 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 3229480 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 3235470 21836676 ~ 21836866 (-) True XLOC_034675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU124002 True 428 lncRNA 0.48 1 CI01000019 5511216 ~ 5511643 (+)
grasscarp (Ctenopharyngodon idella) TU573086 True 373 TUCP 0.56 2 CI01000344 651860 ~ 668146 (-)
bowfin (Amia calva) TU124002 True 2148 TUCP 0.51 3 CM030132.1 14690870 ~ 14695370 (-)