RNA id: TCONS_00068673


Basic Information

Item Value
RNA id TCONS_00068673
length 307
lncRNA type read_through
GC content 0.46
exon number 1
gene id XLOC_034605
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 17574435 ~ 17582403 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttaaaactgtcggttgggtttagggaagtgggtgcacgggtcaatcggtgcttttgaaaacactattgggtGAGTCAGTctatcaatcattcagtcagtcagtcgacagcagcctctagtggttttacgcgagaacagcaggcgtgaatggcactcgcgagagaaatttgagatctcaaaaagcgtagacagcagcctctggtggattcacaaaaacaaaaactgcaaaaaacttagctcctgggacatatttggcgctctccagaaattcATAGCGGTAGGTTTTCAGAGTGAGTCTGGTGTT

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067366 lncRNA downstream 195481 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00069168 lncRNA downstream 320179 17222537 ~ 17255612 (-) False XLOC_034596
TCONS_00069169 lncRNA downstream 320180 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00069167 lncRNA downstream 1226702 16347500 ~ 16349089 (-) False XLOC_034591
TCONS_00068672 lncRNA downstream 1352687 16222045 ~ 16223104 (-) True XLOC_034589
TCONS_00067389 lncRNA upstream 119129 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00067396 lncRNA upstream 234206 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067415 lncRNA upstream 1066917 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067420 lncRNA upstream 1131886 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00069170 lncRNA upstream 1140663 18716760 ~ 18723012 (-) False XLOC_034627
TCONS_00067379 mRNA downstream 4774 17566111 ~ 17571017 (-) True XLOC_034604
TCONS_00067378 mRNA downstream 4868 17566111 ~ 17570923 (-) False XLOC_034604
TCONS_00067377 mRNA downstream 75805 17466011 ~ 17499986 (-) True XLOC_034603
TCONS_00067376 mRNA downstream 117919 17424379 ~ 17457872 (-) False XLOC_034602
TCONS_00067375 mRNA downstream 117919 17424379 ~ 17457872 (-) True XLOC_034602
TCONS_00067381 mRNA upstream 12592 17588689 ~ 17591007 (-) True XLOC_034606
TCONS_00067382 mRNA upstream 21787 17597884 ~ 17600415 (-) True XLOC_034607
TCONS_00067383 mRNA upstream 48088 17624185 ~ 17627320 (-) True XLOC_034608
TCONS_00067384 mRNA upstream 57016 17633113 ~ 17635717 (-) True XLOC_034609
TCONS_00067386 mRNA upstream 72834 17648931 ~ 17690983 (-) False XLOC_034611
TCONS_00067372 other downstream 159699 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067360 other downstream 311482 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067355 other downstream 733675 16841999 ~ 16842116 (-) True XLOC_034594
TCONS_00067347 other downstream 1226359 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067339 other downstream 1394199 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067385 other upstream 65091 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067399 other upstream 286328 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067401 other upstream 670940 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067412 other upstream 987667 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067426 other upstream 1250877 18826974 ~ 18827973 (-) True XLOC_034629

Expression Profile

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