RNA id: TCONS_00067379


Basic Information

Item Value
RNA id TCONS_00067379
length 3016
RNA type mRNA
GC content 0.37
exon number 6
gene id XLOC_034604
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 17566111 ~ 17571017 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAAACGACTCTGTGTGATCATCTTCCTCTTGTGTGAAGTCTctgAGACAGTGTATGGAAACATCATACAGCCTGATACAGTTGTGTCATTTCAGGAAGGAGAGACAGCAGTTTTGCGCTGTTTTATCACAAATTCACAAATGAGCATGACACTGTGGTACAAGCAAGTCACAGGAGAAGAGCCACGTCTCATTGCTTCCTCTATCCTACGTTCATCAGAAATCCAATTTCACAATGAATTTGACAGCAGTCATTTTGAAGTGTTGAGAGACACTGGTGGTTTTAATCTGAAGATTGTGAACGCTGTACAGTCAGATTCAGGAACATATTATTGTGCTACATCTTTTTCCAATGTCATTGAGTTTGGAAATGGCACTCGTCTGGTTGTTAAAGGAACAAATCTCAACAAACCCACTTATCTACAGTTGCATGAGCTTGAACAAGTTGAGTCGGCAAAAAACCCTCTTCTCTGTTCAGTCCAAAACCAGCTAGTGAGAAATGAACATCGTCTCTACTGGTTCAGTCATGGGTCAGAAGAATCTCCTCCAGGGTTTATTCATATTTATGGAAACTCAAGTAAATCATGTGTCGGGAGCTCTAAATCTGACTGTCTTTCACCGACCTGCATGTACAATCTCCCAATGAAAAGATCAAGGTCATCAGAAATGGAAATGCATTATTGTGCACTGGCCACATGTGGACAGGCTTTATTTGGAAATGTTTCTAAACTCAATTTAGatgctGTTGGGAGCCCGAAAATATTGTTCATTCAAATTGGCCTCGGTGTGTTACTGGCAATAAGTCTTGCAATCAATATTCTGCTTTGCTGTCAGAGGAAAAATGgGAGAAAATCTCAAATACAGACTGCTGATGAAGATTTGTCAATAAATCCGtttagtgAAGTGACCTACGCTACTGTAAACACCTCCAGCAAACACTCAAGAGTGAAGAGAGAGAGCAAACAAGAGGACACGCTGTATTCTGGTTTAGCATGTCAACAACACAGCTGAAAACTACTTATTTtagatacatactgtatataattagCTCTCTAATCAACTCCAATTGTGACTTGTTCTTATACATCTTTATTACATGTACAATGCTTTTTTGTCAAGCCAAAAGTTCCTTGTAATTGTATGTCATTTTGTGAGGGCAAAGATGTAGATTTGCTTTTGATATTGCTGTGTAACAGCTACCAATAAGTGCTTTTCTCAGTGGAGCAGTGTGCctgttcttattttatttattcattaattttcctgcggcgcagtccctttatttatcaggggtcgcaacagtgaatgatccaccaacttatccagggtatgttttatgcagcagatgcccttccagccacaacccagtactatgtacactatggccaatttagttcattcaattcacctataccgcatatctTCGGACTGTGGAGCACCGgtaggaaactcacgcgaacggggagaacatgcaaactccacacagaaatgctaactgacccaactAGGActcaaaccttcttgctgtgaagcgacagtgctaaccgctgagccaccgtgtcgccgttttcattttataataatttaaaatgtaaacatttttgttttactttaagtAGCTTGTTAGTTCAAGTGTCAAAACAATAACTTTTTTGAGCcaatgcattacatttttacGTTTCTGCATAAAATGTATTATCCAACTGAAAATCACATAGGGAGACCTCATGGGTTCACCACTAGCTGGGCCACCCAATAGGCTCCAAATAAGATGTCCATTTTAAGCCAATGACCACTCTGTACCTCTGTAGTTCATGTAAAATTCATGTGGGCCCCATATTATGTGCTTGCTGTGTGGGGTGGGGACAGATCCTATCCGCAAAGTATATAGGTTTTcacgctttacacacataaattcACATAAATTATTTTCTTCTCAATAGTTAAAGAAAAAGAatctgttgaaataaaaaaaagataaaatatatatactattacGTACTTTTATggtattcaggagccatgtgccaTCTTTGACAGGTGCTTTCCTTCTCTCTTTGTTTTAAAAGCATCataagcatctgctaaatgactaaatgtaaatgcttaTTAACACTtgcatatgaaataaaaaagtgaagAGAAAAACAATTGTCAAGTAAAGACCCAGGGTTTGGGGATGCCATACAACAAAGCATTAGCGATTACATTCAgaaaaaatagacaaaacaagtaaaaaaataatacattaagtaTAAATTTACATGTACAGATGAATAAAAATAGACCCACATTAAAAATGACCTTAAATACACTAATCAAATgagaaaatttttatttaaaacatgcgATTTGTTTCGGGTTGCCAAGTAAGTGAAtgttttttatactgtaaaatgtacataAGAATGATTTCCACGAATAAATAAATTGGtataaaaaagtacaaataattAACGAGGTTACTGTTTTATATGCAATGTATAATTCATTCATAAGTAACGTATTCCCAGCTTATTTTCCTGTTTATCGACGCCCATTGTCACTAACCAATTAAAAACTGCACTGTTCTAGTTAGCTACActacattttttacagtcattggctaCACACTACAGACTGAGGCGAACTTGAGAATTGAGACTATACTAATTTATGTGACATAGGGGAGACATATTAACGGTTTTTACAAACAAGGTATTTTACTAAACAGACTTAACAAATTAACAGAAATATAACAAGCACAAAGTGATAATTATTAAAGCTAACCAATTGTAATAATCctgacaaataaaaataactcCGAAATAATATTTAATCCATTCGTCCTCCCCTACTTTTGAGATGGTATCAGCCGGCTGAAGCGGGAAGAATAAAAGTCTTTTCCGCCCTTTTCCAAACTGTTTACCAGTCGAGACCGCGAAAATGGAGGACACCAGACCACTCATTACTCACCTCTCAGAAACCTCGTTCCAAACAAGGATTTAAAAGCAGTAGACCTAccacaaaacgt

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020225-40 Predicted to be involved in response to bacterium. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestine; kidney; and spleen. Orthologous to human SIRPB2 (signal regulatory protein beta 2).

Ensembl:

ensembl_id ENSDART00000080624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067366 lncRNA downstream 185801 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00069168 lncRNA downstream 310499 17222537 ~ 17255612 (-) False XLOC_034596
TCONS_00069169 lncRNA downstream 310500 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00069167 lncRNA downstream 1217022 16347500 ~ 16349089 (-) False XLOC_034591
TCONS_00068672 lncRNA downstream 1343007 16222045 ~ 16223104 (-) True XLOC_034589
TCONS_00068673 lncRNA upstream 4774 17575791 ~ 17576097 (-) True XLOC_034605
TCONS_00067389 lncRNA upstream 124209 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00067396 lncRNA upstream 239286 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067415 lncRNA upstream 1071997 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067420 lncRNA upstream 1136966 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00067377 mRNA downstream 66125 17466011 ~ 17499986 (-) True XLOC_034603
TCONS_00067376 mRNA downstream 108239 17424379 ~ 17457872 (-) False XLOC_034602
TCONS_00067375 mRNA downstream 108239 17424379 ~ 17457872 (-) True XLOC_034602
TCONS_00067373 mRNA downstream 122779 17420325 ~ 17443332 (-) False XLOC_034602
TCONS_00067380 mRNA upstream 3418 17574435 ~ 17582403 (-) False XLOC_034605
TCONS_00067381 mRNA upstream 17672 17588689 ~ 17591007 (-) True XLOC_034606
TCONS_00067382 mRNA upstream 26867 17597884 ~ 17600415 (-) True XLOC_034607
TCONS_00067383 mRNA upstream 53168 17624185 ~ 17627320 (-) True XLOC_034608
TCONS_00067384 mRNA upstream 62096 17633113 ~ 17635717 (-) True XLOC_034609
TCONS_00067372 other downstream 150019 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067360 other downstream 301802 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067355 other downstream 723995 16841999 ~ 16842116 (-) True XLOC_034594
TCONS_00067347 other downstream 1216679 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067339 other downstream 1384519 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067385 other upstream 70171 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067399 other upstream 291408 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067401 other upstream 676020 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067412 other upstream 992747 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067426 other upstream 1255957 18826974 ~ 18827973 (-) True XLOC_034629

Expression Profile

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